View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16523_low_5 (Length: 475)
Name: NF16523_low_5
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Complemental strand, 38919998 - 38919569
Alignment:
| Q |
17 |
agtatctcattccttttacagcaaactagggtctgtatttgatccactctaaagaatttccatataatgcaacctaccaaaacaaattaggcttgacttt |
116 |
Q |
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| T |
38919998 |
agtatctcattccttttacagcaaactagggtctgtatttgatccactctaaagaatttccatataatgcaacctaccaaaacaaattaggcttgacttt |
38919899 |
T |
|
| Q |
117 |
ttgcaaacttgcatatataacacaacatgtaatttcttatcattccaaccaaatgttaaacttcattccttattgcaactttgatgtgatttatttttgt |
216 |
Q |
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| T |
38919898 |
ttgcaaacttgcatatataacacaacatgtaatttcttatcattccaaccaaatgttaaacttcattccttattgcaactttgatgtgatttatttttgt |
38919799 |
T |
|
| Q |
217 |
attcatttgtcaactaagggaatatattgatatatgctagccttgatccagctcatgccaacaaattctcaaccaaattaccttattaataatattcctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38919798 |
attcatttgtcaactaagggaatatattgatatatgctagccttgatccagctcatgccaacaaattctcaaccaaattaccttattaataatattcctc |
38919699 |
T |
|
| Q |
317 |
tccaaataaaacccctctccacctctccacatactcaccaaacctcatcttcaaatcttaattctccttcactaacttaccaacatggcactcaccacta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38919698 |
tccaaataaaacccctctccacctctccacatactcaccaaacctcatcttcaaatcttaattctccttcactaacttaccaacatggcactcaccacta |
38919599 |
T |
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| Q |
417 |
caacacctcttgcactcattcatctcactc |
446 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
38919598 |
caacacctcttgcactcattcttctcactc |
38919569 |
T |
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