View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16523_low_6 (Length: 409)
Name: NF16523_low_6
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16523_low_6 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 22706321 - 22706223
Alignment:
| Q |
103 |
catacttctatttatattatatcctagaaaataaaaa-taataaaagttggc--catttaatgacaacttctatttattccaatggacacaacttttca |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||| | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22706321 |
catacttctatttatattatatcctagaaaagaaaaaataataaaagttgtcaccatttcaagacaacttctatttattccaatcgacacaacttttca |
22706223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 303
Target Start/End: Original strand, 6617766 - 6617938
Alignment:
| Q |
136 |
aaaataataaaagttggc--catttaatgacaacttctatttattccaatggacacaacttttc-actataaaaatatgaccgtttcatctttaaaaatt |
232 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||| |||||||| | ||||||| |||| || || |
|
|
| T |
6617766 |
aaaataattaaagttggcatcatttcatgaaaatttctatttattccaatggacacaacttttcaactacgaaaatatgtctgtttcatgtttacaattt |
6617865 |
T |
|
| Q |
233 |
tgccaataaaa-atatccataaccaaatc-aaatttacacatttttgaactctcaaaaatctctttctcttgc |
303 |
Q |
| |
|
||| |||||| ||||||| ||||||| | ||| | |||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
6617866 |
agcctataaaagatatccaaaaccaaaccaaaagtcacacatttgcgaactcttcaaaatctctttttcttgc |
6617938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 6625033 - 6624979
Alignment:
| Q |
339 |
tatgttgttccaattcaatcaattccatccatgactaacaacaaaatgtaaatcg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
6625033 |
tatgttgttccaattcaatcaattccatccatgactaacagcaacatggaaatcg |
6624979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 353
Target Start/End: Original strand, 101438 - 101659
Alignment:
| Q |
136 |
aaaataataaaagttggc--catttaatgacaacttctatttattccaatggacacaacttttc-actataaaaatatgaccgtttcatctttaaaaatt |
232 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| || ||||||||||||||||||| |||||||||| | || |||||||||| || ||||| ||||||| || |
|
|
| T |
101438 |
aaaataataaaacttggcatcatttcatgaaaatttctatttattccaatggatacaacttttcaattagaaaaatatgatcgattcatgtttaaaattt |
101537 |
T |
|
| Q |
233 |
tgccaataaaa-atatccataaccaaatc-aaatttacacatttttgaactctcaaaaatctctttctcttgcttgtgttgggttctgcaagtttagtta |
330 |
Q |
| |
|
||| |||||| ||||||| ||||||| | ||| | ||||| ||| ||||||| ||||||||||||||||||| |||||| ||| ||| |||| | | | |
|
|
| T |
101538 |
agcctataaaagatatccaaaaccaaaccaaaagtcacaca-tttgaaactctccaaaatctctttctcttgctagtgttgtgttgtgcgagttcaatca |
101636 |
T |
|
| Q |
331 |
aaacagtgtatgttgttccaatt |
353 |
Q |
| |
|
|| | |||||||| |||||||| |
|
|
| T |
101637 |
taaaaatgtatgttattccaatt |
101659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 15155254 - 15155158
Alignment:
| Q |
103 |
catacttctatttatattatatcctagaaaataaaaataataaaagttggc--catttaatgacaacttctatttattccaatggacacaacttttca |
198 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||||||||| || ||||| |||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
15155254 |
catacttctatttatattatatccg-gcaaattaaaataataaaagtttgcaccatttcatgaaaatttctatttattccaatggatacaacttttca |
15155158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University