View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16523_low_8 (Length: 327)

Name: NF16523_low_8
Description: NF16523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16523_low_8
NF16523_low_8
[»] chr5 (1 HSPs)
chr5 (10-292)||(30898806-30899090)
[»] chr1 (2 HSPs)
chr1 (223-259)||(31833983-31834019)
chr1 (219-257)||(38548771-38548809)
[»] chr8 (1 HSPs)
chr8 (219-257)||(5200482-5200520)
[»] chr4 (1 HSPs)
chr4 (219-259)||(15186981-15187021)
[»] chr3 (1 HSPs)
chr3 (219-259)||(43073046-43073086)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 30899090 - 30898806
Alignment:
Q  10 ataattctcaagggatacttgtctacatcagttctataatcatagttttggcatcgaatcaaaatctagcaaattttaactagccaaaagacatatacac 109  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  30899090 ataattctcaagggatactcgtctacctcagttctataatcatagttttggcatctaatcaaaatttagcaaattttaactagccaaaagacatatacac 30898991  T
Q  110 atacaattacttaatttggatcatagaacaagtttggatacaaacataaaggtatgaaactgaaattctcactaacaattacaatttcaagaccacttaa 209  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30898990 atacaattacttaacttggatcatagaacaggtttggatacaaacataaaggtatgaaactgaaattctcactaacaattacaatttcaagaccacttaa 30898891  T
Q  210 --nnnnnnnnnaatcggcaaaatattattaaccaacaaatccatgcaagatgaattgtcacttcatatattccactccatacaca 292  Q
               |||||||||||||||||||||||| ||| || |  ||||||||||||||||||| |||||||||||||||||||    
T  30898890 tttttttttttaatcggcaaaatattattaaccaataaacccgtataagatgaattgtcacttcacatattccactccatacaca 30898806  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 31834019 - 31833983
Alignment:
Q  223 ggcaaaatattattaaccaacaaatccatgcaagatg 259  Q
    ||||||||||||||||||||||||||| |||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatg 31833983  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 38548809 - 38548771
Alignment:
Q  219 aatcggcaaaatattattaaccaacaaatccatgcaaga 257  Q
    |||||||||||||||||||||||||||| || |||||||    
T  38548809 aatcggcaaaatattattaaccaacaaacccgtgcaaga 38548771  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 5200482 - 5200520
Alignment:
Q  219 aatcggcaaaatattattaaccaacaaatccatgcaaga 257  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  5200482 aatcggcaaaatattattaaccaacaagtccgtgcaaga 5200520  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 15186981 - 15187021
Alignment:
Q  219 aatcggcaaaatattattaaccaacaaatccatgcaagatg 259  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  15186981 aatcggcaaaatattattaaccaacaagcccgtgcaagatg 15187021  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 43073046 - 43073086
Alignment:
Q  219 aatcggcaaaatattattaaccaacaaatccatgcaagatg 259  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  43073046 aatcggcaaaatattattaaccaacaagcccgtgcaagatg 43073086  T

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