View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16524_high_1 (Length: 828)
Name: NF16524_high_1
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 25 - 625
Target Start/End: Complemental strand, 36609048 - 36608433
Alignment:
| Q |
25 |
gggtcttaattactcttatctaagtgtannnnnnnaagaaggtaaattagttcacctaaattgtcatcgaggagaattgaatatgagagaaatgcacttc |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
36609048 |
gggtcttaattactcttatcaaagtgtatttttttaataagttaaactagctcacctaaattgtcattgaggagaatcgaatctgagagaaatgcacttc |
36608949 |
T |
|
| Q |
125 |
aaggtcgcaagtcaacaccaccaaaccaactccagggtcgtaagtaataccacacaaatga-------------gacatatagtctaatcttttttaagg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
36608948 |
aaggtcgcaagtcaacaccaccaaaccaacttcagggtcgtaagtaataccaaacaaatgaatattacaaatgagacatatagtttaatcttttttaagg |
36608849 |
T |
|
| Q |
212 |
gataatatagatggatatatattatttgaattttgaaagaataatagtagtatccgtctattttagtgaaaaggccactattggactgtacgtcctcaag |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36608848 |
gataatatagacggatatatattatttgaattttgaaagaataatagtagtatcagtctattttagtgaaaaggccattattggactgtacgtcctcaag |
36608749 |
T |
|
| Q |
312 |
gctgggaattgagatgtggtccagacattacttaatatttggccaataattcaacagctgcaatttatctattgtccattgttagtcatggcctcctaat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608748 |
gctgggaattgagatgtggtccagacattacttaatatttggccaataattcaacagctgcaatttatctattgtccattgttagtcatggcctcctaat |
36608649 |
T |
|
| Q |
412 |
tcttcctctatcctccctagctgaatttcattctcttgaaaaatcaagaatatagtttatacatatataaacagagatattcagaatcaacattgtacat |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36608648 |
tcttcctctatcctccctagctgaatttcattctcttgaaaaatcaagaatatagtttatacatatataaacagagatattcagaatcaacgttgtacat |
36608549 |
T |
|
| Q |
512 |
atcaaaatggaagcatcatcatcagaaaacaatgataatatcacatcccctctccgtaagcaaacatgc--atatccatctccttcattttcaaatttac |
609 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36608548 |
atcaaaatggaagcaccatcatcacaaaacaatgataatatcacatcccctctccgtaagcaaacatgcatatatccatctccttcattttcaaatttac |
36608449 |
T |
|
| Q |
610 |
aatttctttcattacc |
625 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36608448 |
aatttctttcattacc |
36608433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 677 - 812
Target Start/End: Complemental strand, 36608381 - 36608246
Alignment:
| Q |
677 |
cttgtagtatctaaggagaatgaatcagaggaaaattctcccatcaaacaagtggctctaacggtgccaacaacagatgacccttctctaccagttctaa |
776 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608381 |
cttgtagtatctaagaagaatgattcagaggaaaattctcccatcaaacaagtggctctaacggtgccaacaacagatgacccttctctaccagttctaa |
36608282 |
T |
|
| Q |
777 |
cattccgaatgtgggtattaggaaccctttcatgtg |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36608281 |
cattccgaatgtgggtattaggaaccctttcatgtg |
36608246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 27030471 - 27030419
Alignment:
| Q |
60 |
aagaaggtaaattagttcacctaaattgtcatcgaggagaattgaatatgaga |
112 |
Q |
| |
|
|||||| ||||||||| |||| |||||| ||||||||||||||||| |||||| |
|
|
| T |
27030471 |
aagaagttaaattagtccacccaaattggcatcgaggagaattgaacatgaga |
27030419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University