View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16524_high_18 (Length: 399)

Name: NF16524_high_18
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16524_high_18
NF16524_high_18
[»] chr1 (1 HSPs)
chr1 (1-352)||(28450925-28451263)
[»] chr4 (3 HSPs)
chr4 (3-177)||(21080605-21080783)
chr4 (257-337)||(11352558-11352639)
chr4 (257-305)||(24725121-24725169)
[»] chr5 (1 HSPs)
chr5 (110-182)||(9507493-9507566)
[»] chr3 (2 HSPs)
chr3 (108-182)||(27237130-27237205)
chr3 (110-182)||(32813406-32813479)
[»] chr2 (1 HSPs)
chr2 (110-177)||(45485996-45486064)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 28450925 - 28451263
Alignment:
Q  1 aacttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatgctaactaattaactgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28450925 aacttaacaaacttcaacaaaattttgtaaccaactta-------------acaagtaaactccttaactcataaaatcatgctaactaattaactgaat 28451011  T
Q  101 taacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagagacttggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28451012 taacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagagacttggt 28451111  T
Q  201 taacaaatatgcaatcgattcttctatcttgcgatgcttgatttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctcaatgtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28451112 taacaaatatgcaatcgattcttctatcttgcgatgcttgatttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctcaatgtgt 28451211  T
Q  301 ttactttttcatgaaccacttgatgctttgctaagtctaatgcatacttact 352  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28451212 ttactttttcatgagccacttgatgctttgctaagtctaatgcatacttact 28451263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 21080605 - 21080783
Alignment:
Q  3 cttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatg------ctaactaattaact 96  Q
    |||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||   ||||||||  |||  || ||      ||||||||  ||||    
T  21080605 cttaacaaacttcaacaaaatttc-taactaactgagtttacttgttcaacaagtaactcccttaacttctaa--tcttgaactaactaactaaccaact 21080701  T
Q  97 gaatta--acttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaag 177  Q
    ||||||  ||  ||||| ||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||    
T  21080702 gaattataacaccctaacacacctcct-aattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaag 21080783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 337
Target Start/End: Original strand, 11352558 - 11352639
Alignment:
Q  257 tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttactttttc-atgaaccacttgatgctttgctaagtc 337  Q
    ||||||||||||| || || |||| ||||| ||||||||||||||||||| ||| |||||| | | ||||||| ||||||||    
T  11352558 tgtttacttgatctcttaggaaatggaaacgtgtctcaatgtgtttacttcttcgatgaacaattggatgcttggctaagtc 11352639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 24725121 - 24725169
Alignment:
Q  257 tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttact 305  Q
    ||||||||||||||||||| ||||  |||||||||||| |||| |||||    
T  24725121 tgtttacttgatccctaaggaaatgaaaacatgtctcattgtgcttact 24725169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 9507566 - 9507493
Alignment:
Q  110 aatacacctccttaattcatt-agttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct 182  Q
    ||||||||||||||||||||| ||||||   |||||||||||||||  || ||| ||||||| |||||||||||    
T  9507566 aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagttgct 9507493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 27237205 - 27237130
Alignment:
Q  108 ctaatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct 182  Q
    ||||||||||||||||||||| ||||||||   ||||| |||||||||  || ||| ||||||| |||||||||||    
T  27237205 ctaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgct 27237130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 32813479 - 32813406
Alignment:
Q  110 aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct 182  Q
    ||||||||||||||||||| ||||||||   |||||||||||||||  || ||| ||||||| |||||| ||||    
T  32813479 aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagctgct 32813406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 45485996 - 45486064
Alignment:
Q  110 aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaag 177  Q
    ||||||||||||||||||| ||||||||   |||||||||||||||  || ||| ||||||| ||||||    
T  45485996 aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaag 45486064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University