View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_high_2 (Length: 680)
Name: NF16524_high_2
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 37779319 - 37779595
Alignment:
| Q |
14 |
cacagacaagatccaaaattcattcattctattactattgaggaggttaggagagaacatctctctggttaggagtttctgactcttgaaatgtgatccc |
113 |
Q |
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| T |
37779319 |
cacagacaagatccaaaattcattcattctattactattgagtaggttaggagagaacatctctctggttaggagtttctgactcttgaaatgtgatccc |
37779418 |
T |
|
| Q |
114 |
ttcattgtagagcttctatgctcattatttccattcaataatatacatatttcatcaatctgtttgtgatttctattaatgaccttagaggaagctcttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37779419 |
ttcattgtagagcttctatgctcattatttccattcaataatatacatatttcatcaatctgtttgtgatttctattaatgaccttagaggaagctcttt |
37779518 |
T |
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| Q |
214 |
acttgaaggataagggaatcaaatcaacaagaacaaaacctgaaatccatggccttaata-cgtgcaccaaattcac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
37779519 |
acttgaaggataagggaatcaaatcaacaagaacaaaacctgaagtccatggccttaatatcgtgcaccaaattcac |
37779595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 282 - 427
Target Start/End: Original strand, 38386795 - 38386938
Alignment:
| Q |
282 |
aaattcacaaacaccaacacataatgttcaaatagctacaaacctctttctgaaaaacttaaa-atacattccacgtcacgaccaaagtacctaaaacaa |
380 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| || |||||| |||||||||| |||||| |
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| T |
38386795 |
aaattcacaaacaccaacacataatgtcaaaataactacaaacctctttctgaaaaacttaaagatacattcaacatcacgatcaaagtacctgaaacaa |
38386894 |
T |
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| Q |
381 |
ggaaaaataataagcagttaaggcctaacgaaaatatgttggttgaa |
427 |
Q |
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| T |
38386895 |
ggaaagattata---agttaaggcctaacgaaaatatattagttgaa |
38386938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 3382211 - 3382150
Alignment:
| Q |
117 |
attgtagagcttctatgctcattatttccattcaataatatacatatttcatcaatctgttt |
178 |
Q |
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|||||||||||||||||||||| |||| |||| ||||||| ||||||||||||| ||||||| |
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| T |
3382211 |
attgtagagcttctatgctcatcatttacattgaataatacacatatttcatcattctgttt |
3382150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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