View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16524_high_22 (Length: 325)
Name: NF16524_high_22
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 47190113 - 47190411
Alignment:
| Q |
17 |
cacatacaaatcatatgtttgcatcattcaattaacagaaaaatgaattgtatattaactcataagtacattttttggaagaaacatgcaacttgtcaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47190113 |
cacatacaaatcatatgtttgcatcattcaattaacagaaaaatgaattgtatattaactcataagtacattttttggaagaaacatgcaacttgtcaca |
47190212 |
T |
|
| Q |
117 |
cagacaaatttgctacctgaagtgactatcttgccttgtgcttacaaattgaatatatcaatgtcttgagatgagaaaattacaataatcataatctcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47190213 |
cagacaaatttgctacctgaagtgactatcttgccttgtgcttacaaattgaatatatcaatgtcttgagatgagaaaattacaataatcataatctcaa |
47190312 |
T |
|
| Q |
217 |
atgataaatgtataaataatgaactgagctgaagatgactctcactggaagtgatcaatttcttattttacactgcttcaaagattgatgtgtcctttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47190313 |
atgataaatgtataaataatgaactgagctgaagatgactctcactggaagtgatcaatgtcttattttacactgcttcaaagattgatgtgtcctttg |
47190411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University