View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_high_26 (Length: 297)
Name: NF16524_high_26
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_high_26 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 31242217 - 31241931
Alignment:
| Q |
11 |
gtgcctacagagctggcaacgtagttccgccaatgtttataagtgatcatttaaaaatattaaggatacacgtgagtttactcnnnnnnnnnnnnnnnnn |
110 |
Q |
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| T |
31242217 |
gtgcctacagagctgacaacgtagttccgtcaatgtttataagtgatcatttataaatattaaggatacacgtgagtttacctaaaaacaaaattaaaaa |
31242118 |
T |
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| Q |
111 |
ngtatgataacatataatttttaaaaccccatcaataaatacaacaacaatcaagtcttgctcgatataaacaattaaatgaagaatttccttctaaatt |
210 |
Q |
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| T |
31242117 |
agaatgataacatataatttttaaaaccccatcaataaatacaacagcaatcaagtcttgcttgatataaacaattaaatgaagaatttccttctaaatt |
31242018 |
T |
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| Q |
211 |
acttaaagagggtgctaaattgaatatgaacaattcaaagtacttaactagaaaaattgcatcactgaaaagaagaaaaatgtcata |
297 |
Q |
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| T |
31242017 |
acttaaagagggtgctaaattgaatatgaacaattcaaagtacttaactagaaaagttgcatcaccgaaaagaagaaaaatgtcata |
31241931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 31290489 - 31290449
Alignment:
| Q |
2 |
tgggggcacgtgcctacagagctggcaacgtagttccgcca |
42 |
Q |
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| T |
31290489 |
tgggggcacgtgcctgcagagttggcaacgtagctccgcca |
31290449 |
T |
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