View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_high_36 (Length: 240)
Name: NF16524_high_36
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2321154 - 2320932
Alignment:
| Q |
1 |
ctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321154 |
ctccattgtcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagc |
2321055 |
T |
|
| Q |
101 |
agtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccattccattctcactcaactttcgtttctcctcgggcaactccaacttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2321054 |
agtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactct |
2320955 |
T |
|
| Q |
201 |
aaaagagtatctgcatacgaaac |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2320954 |
aaaagagtatctgcatacgaaac |
2320932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2303453 - 2303231
Alignment:
| Q |
1 |
ctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagc |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| ||||||| |
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|
| T |
2303453 |
ctccattctcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtacttaaccaaattcgccataatccattgcaaagt |
2303354 |
T |
|
| Q |
101 |
agtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccattccattctcactcaactttcgtttctcctcgggcaactccaacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2303353 |
agtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactct |
2303254 |
T |
|
| Q |
201 |
aaaagagtatctgcatacgaaac |
223 |
Q |
| |
|
| ||||||||||||||||||||| |
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|
| T |
2303253 |
agaagagtatctgcatacgaaac |
2303231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2293840 - 2293618
Alignment:
| Q |
1 |
ctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagc |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |
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|
| T |
2293840 |
ctccattttcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcactacattcgccataatccactgcaaact |
2293741 |
T |
|
| Q |
101 |
agtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccattccattctcactcaactttcgtttctcctcgggcaactccaacttt |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| ||| |||| |||| | |
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|
| T |
2293740 |
agtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggccactctaactct |
2293641 |
T |
|
| Q |
201 |
aaaagagtatctgcatacgaaac |
223 |
Q |
| |
|
|| |||||||||||||| ||||| |
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|
| T |
2293640 |
aagagagtatctgcatatgaaac |
2293618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2310171 - 2309949
Alignment:
| Q |
1 |
ctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagc |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||| |
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|
| T |
2310171 |
ctccattttcatcaccacccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttcaccacattcgccataatccactccaaact |
2310072 |
T |
|
| Q |
101 |
agtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccattccattctcactcaactttcgtttctcctcgggcaactccaacttt |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| ||| |||| |||| | |
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|
| T |
2310071 |
agtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctactctaactct |
2309972 |
T |
|
| Q |
201 |
aaaagagtatctgcatacgaaac |
223 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
2309971 |
aaaagagtatctgcatatgaaac |
2309949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 2330707 - 2330501
Alignment:
| Q |
17 |
acccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatcc |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
2330707 |
acccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcaccaaattcgccataatccattgcaaagcggtggaagtagtatcc |
2330608 |
T |
|
| Q |
117 |
gtcccaccgttcaaaaactccgaacaaagattaaccattccattctcactcaactttcgtttctcctcgggcaactccaactttaaaagagtatctgcat |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| |||| ||| ||||||||| || |||||||||| ||||||||||||| | |||||||||| ||| |
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|
| T |
2330607 |
gtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcctgaggcaactccaactccataagagtatctacat |
2330508 |
T |
|
| Q |
217 |
acgaaac |
223 |
Q |
| |
|
||||||| |
|
|
| T |
2330507 |
acgaaac |
2330501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2351029 - 2350806
Alignment:
| Q |
1 |
ctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagc |
100 |
Q |
| |
|
||||||| |||||| |||||||||||| | |||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2351029 |
ctccatttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatccattgcaaagc |
2350930 |
T |
|
| Q |
101 |
agtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccattccattctcactcaactttcgtttctcctcgggcaactccaacttt |
200 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||| ||||||||| |||||||| ||| |||||||| || |||||||| || ||||||||||||| |
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|
| T |
2350929 |
cgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactccaactcc |
2350830 |
T |
|
| Q |
201 |
aaaagagtatctgcatacgaaact |
224 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
2350829 |
aaaagagtatccacatacgaaact |
2350806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 2326999 - 2326798
Alignment:
| Q |
10 |
catcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagt |
109 |
Q |
| |
|
|||||| |||||| | ||| | |||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
2326999 |
catcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaccaaattcgccataatccaatgcaaagcggtggaagt |
2326900 |
T |
|
| Q |
110 |
agtatccgtcccaccgttcaaaaactccgaacaaagattaaccattccattctcactcaactttcgtttctcctcgggcaactccaactttaaaagagta |
209 |
Q |
| |
|
|||||| || ||| | ||||||||||||||||||||| |||||||| ||| |||| ||||||| ||||| ||| ||||||||||||| ||||| ||| |
|
|
| T |
2326899 |
agtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttccgtttttccattggcaactccaactccaaaagtgta |
2326800 |
T |
|
| Q |
210 |
tc |
211 |
Q |
| |
|
|| |
|
|
| T |
2326799 |
tc |
2326798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 41126967 - 41126810
Alignment:
| Q |
66 |
tacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccattccattctcac |
165 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | || ||||| || || || || ||| | ||||||||||| |||||||| | |||||| ||| |||| |
|
|
| T |
41126967 |
tacttcaccaaattagccatgatccactggagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac |
41126868 |
T |
|
| Q |
166 |
tcaactttcgtttctcctcgggcaactccaactttaaaagagtatctgcatacgaaac |
223 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
41126867 |
tcagcttgcgtttctcctcgggcaactccaattccaaaagagtatctgcataggaaac |
41126810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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