View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16524_high_4 (Length: 630)

Name: NF16524_high_4
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16524_high_4
NF16524_high_4
[»] chr3 (11 HSPs)
chr3 (123-611)||(29821745-29822219)
chr3 (19-74)||(29821641-29821696)
chr3 (526-577)||(49333873-49333923)
chr3 (528-602)||(54653010-54653085)
chr3 (528-581)||(43102304-43102357)
chr3 (526-621)||(33149973-33150069)
chr3 (526-581)||(47807849-47807904)
chr3 (122-152)||(33150320-33150350)
chr3 (526-571)||(12992033-12992077)
chr3 (121-193)||(33150079-33150152)
chr3 (526-571)||(50259425-50259469)
[»] chr6 (4 HSPs)
chr6 (121-285)||(4030587-4030751)
chr6 (19-73)||(4030485-4030539)
chr6 (574-618)||(24546535-24546579)
chr6 (121-153)||(28928805-28928837)
[»] chr5 (3 HSPs)
chr5 (383-525)||(40880222-40880364)
chr5 (526-581)||(1663507-1663562)
chr5 (526-575)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (528-607)||(118777-118856)
chr8 (526-581)||(5777111-5777166)
chr8 (526-571)||(45436181-45436225)
chr8 (537-581)||(7487145-7487188)
[»] chr1 (2 HSPs)
chr1 (528-602)||(3978364-3978439)
chr1 (526-571)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (526-602)||(38407199-38407275)
chr7 (528-581)||(19279339-19279392)
chr7 (526-575)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (526-602)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (528-602)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 123 - 611
Target Start/End: Original strand, 29821745 - 29822219
Alignment:
Q  123 tgttgagattgatgaatatggaagagataaaccatgattgatgaagattctaatgctaaggttgttgctgtgaattgtgatacgcctgggccactgttag 222  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  29821745 tgttgagattgatgaatatggaagagataaaccatgattggtgaagattctaatgctaaggttgttgttgtgaattgtgatccgcctgggccactgttag 29821844  T
Q  223 ttggacagaaacgggttatcaaagctcctg-acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttcta 321  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29821845 ttggacagaaacgggttatcaaagctcctgcacatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttcta 29821944  T
Q  322 taattatgcagtttagaattatgtagtttagtaactgctattttctaggaagttagttatcatgtaatatgtatttgaatgattgtacgtttatcgaatc 421  Q
    |||||||||||||               |||||||| | |||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||    
T  29821945 taattatgcagtt---------------tagtaactaccattttctaggaagttagtttccatgtaatatgtatttgaatgattgtacttttatggaatc 29822029  T
Q  422 atgaagaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcattt 521  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29822030 atgaagaaaatattcagaaaaacttccagccttcctttcttttttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatct 29822129  T
Q  522 atcatgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 611  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822130 atcatattgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 29822219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 29821641 - 29821696
Alignment:
Q  19 attccctcacatattttctctttaacattcaacatgcatcattatcttactatttc 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29821641 attccctcacatattttctctttaacattcaacatgcatcattatcttactatttc 29821696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 526 - 577
Target Start/End: Original strand, 49333873 - 49333923
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgat 577  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  49333873 tgttgttgttgaaattgagatt-gggtgtttgtggttgttgaaaaggttgat 49333923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 54653085 - 54653010
Alignment:
Q  528 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 602  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  54653085 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 54653010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 581
Target Start/End: Complemental strand, 43102357 - 43102304
Alignment:
Q  528 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 581  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||    
T  43102357 ttgttgttgaaattgggattggaatgtttgtggttgttgaaaaggttgttgttg 43102304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 621
Target Start/End: Complemental strand, 33150069 - 33149973
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaa-tgttcttgttgttgatgatg 621  Q
    |||||||||||||||||  |||||||||||| ||||| ||| |||||||| || || || |||||| || || ||| |||| ||||||||| |||||    
T  33150069 tgttgttgttgaaattgccattggggtgtttatggttcttgcaaaggttgctgctgttgttattgtgattaaaaaattgttgttgttgttgttgatg 33149973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 47807849 - 47807904
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 581  Q
    ||||||||||||||||||||||  | ||||||||||| | |||||||||| |||||    
T  47807849 tgttgttgttgaaattgagattaagatgtttgtggttgtcgaaaaggttgttgttg 47807904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 33150350 - 33150320
Alignment:
Q  122 ttgttgagattgatgaatatggaagagataa 152  Q
    |||||||||||||||||||||||||||||||    
T  33150350 ttgttgagattgatgaatatggaagagataa 33150320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 12992033 - 12992077
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 571  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12992033 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 12992077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 33150152 - 33150079
Alignment:
Q  121 attgttgagattgatgaatatggaagagataaacca-tgattgatgaagattctaatgctaaggttgttgctgt 193  Q
    |||||| ||||||||||||||| ||||||||||  | ||||||||||||||| | ||| | ||||| |||||||    
T  33150152 attgtttagattgatgaatatgaaagagataaaaaagtgattgatgaagattttgatgttgaggtttttgctgt 33150079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 50259469 - 50259425
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 571  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50259469 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 50259425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 121 - 285
Target Start/End: Original strand, 4030587 - 4030751
Alignment:
Q  121 attgttgagattgatgaatatggaagagataaaccatgattgatgaagattctaatgctaaggttgttgctgtgaattgtgatacgcctgggccactgtt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4030587 attgttgagattgatgaatatggaagagataaaccatgattgatgaagattctaatgctaaggttgttgctgtgaattgtgatacgcctgggccactgtt 4030686  T
Q  221 agttggacagaaacgggttatcaaagctcctgacatcatcaaaattatatatgttaaatagttta 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4030687 agttggacagaaacgggttatcaaagctcctgacatcatcaaaattatacatgttaaatagttta 4030751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 4030485 - 4030539
Alignment:
Q  19 attccctcacatattttctctttaacattcaacatgcatcattatcttactattt 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4030485 attccctcacatattttctctttaacattcaacatgcatcattatcttactattt 4030539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 24546535 - 24546579
Alignment:
Q  574 tgatgttgctgatattgtaatgaagaaatgttcttgttgttgatg 618  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  24546535 tgatgttgctggtattgtgatgaagaaatgttcttgttgttgatg 24546579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 28928805 - 28928837
Alignment:
Q  121 attgttgagattgatgaatatggaagagataaa 153  Q
    |||||||||||||||||||||||||||||||||    
T  28928805 attgttgagattgatgaatatggaagagataaa 28928837  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 383 - 525
Target Start/End: Complemental strand, 40880364 - 40880222
Alignment:
Q  383 atgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatccctt 482  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||    
T  40880364 atgtaatgtgtatttgaatgattgtacgtttgttgaatcattaagaaaatattcataaaaacttacagccttcctttcttctttaggagactcatccctt 40880265  T
Q  483 ctcgaattggaataatcactacttctctaacaatcatttatca 525  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  40880264 ctcgaattgggataatcactacttctttaacaatcatctatca 40880222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 581
Target Start/End: Complemental strand, 1663562 - 1663507
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 581  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| |||| |||||    
T  1663562 tgttgttgttgaaattgagattgagatgtttgtggttgttgaaaaagttgttgttg 1663507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 10085037 - 10084988
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 575  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  10085037 tgttgttgttgaaattgagattggaatgttcgtggttgttgaaaaggttg 10084988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 528 - 607
Target Start/End: Original strand, 118777 - 118856
Alignment:
Q  528 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaatgttct 607  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||| |||||||||| ||||    
T  118777 ttgttattgaaattgagattggggtgtttatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaattttct 118856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 5777111 - 5777166
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 581  Q
    ||||||||||| ||||||||||||| |||||| | || |||||||||||| |||||    
T  5777111 tgttgttgttggaattgagattgggttgtttgagattgttgaaaaggttgttgttg 5777166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 45436181 - 45436225
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 571  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  45436181 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 45436225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 581
Target Start/End: Original strand, 7487145 - 7487188
Alignment:
Q  537 aaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 581  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  7487145 aaattgagattggggtgtttatgg-ttatgaaaaggttgatgttg 7487188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 3978439 - 3978364
Alignment:
Q  528 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 602  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  3978439 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 3978364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 38961773 - 38961817
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 571  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  38961773 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 38961817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 602
Target Start/End: Original strand, 38407199 - 38407275
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 602  Q
    |||||||||||||||||||||| ||||| || ||| || ||||||||||||||||| || | ||||| ||||||||||    
T  38407199 tgttgttgttgaaattgagattagggtgattatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaat 38407275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 581
Target Start/End: Original strand, 19279339 - 19279392
Alignment:
Q  528 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 581  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||||| |||||    
T  19279339 ttgttgttaaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttg 19279392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 25154619 - 25154668
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 575  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  25154619 tgttgttgttggatttgagattggagtgtttgtggttgttgaaaaagttg 25154668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 602
Target Start/End: Original strand, 26791090 - 26791166
Alignment:
Q  526 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 602  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  26791090 tgttgctgttgaaattgagat-gggatgtttgtggttgttgaaaaggttgttgttgttgttcatggtaatgaagaaat 26791166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 34039702 - 34039627
Alignment:
Q  528 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 602  Q
    ||||||||||||||| ||||||  | ||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  34039702 ttgttgttgaaattgggattggaatatttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 34039627  T

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