View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16524_high_6 (Length: 590)

Name: NF16524_high_6
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16524_high_6
NF16524_high_6
[»] chr2 (28 HSPs)
chr2 (269-468)||(12000467-12000663)
chr2 (298-488)||(17148751-17148940)
chr2 (296-538)||(33909246-33909489)
chr2 (296-468)||(304100-304270)
chr2 (303-488)||(41010450-41010635)
chr2 (295-424)||(41114889-41115018)
chr2 (295-424)||(6799905-6800034)
chr2 (295-424)||(13203734-13203863)
chr2 (296-488)||(25562891-25563095)
chr2 (296-424)||(18299162-18299290)
chr2 (368-458)||(15651247-15651337)
chr2 (298-424)||(22572720-22572846)
chr2 (267-421)||(29257310-29257459)
chr2 (364-463)||(17249354-17249453)
chr2 (466-549)||(12000700-12000784)
chr2 (466-534)||(15651384-15651452)
chr2 (298-385)||(2475792-2475879)
chr2 (461-549)||(303980-304069)
chr2 (395-468)||(16221016-16221089)
chr2 (461-549)||(29257504-29257593)
chr2 (461-549)||(41010650-41010739)
chr2 (460-515)||(2475943-2475998)
chr2 (461-543)||(41114764-41114847)
chr2 (300-358)||(27702021-27702079)
chr2 (363-424)||(15429213-15429274)
chr2 (461-529)||(18299051-18299120)
chr2 (462-515)||(45444377-45444430)
chr2 (466-549)||(13203910-13203994)
[»] chr4 (48 HSPs)
chr4 (300-515)||(41972366-41972581)
chr4 (298-485)||(49745009-49745196)
chr4 (295-424)||(31364102-31364231)
chr4 (266-488)||(52373669-52373898)
chr4 (267-468)||(25237495-25237716)
chr4 (267-418)||(50383819-50383978)
chr4 (296-458)||(8901771-8901932)
chr4 (267-424)||(10715585-10715752)
chr4 (267-424)||(10929355-10929522)
chr4 (312-463)||(50099824-50099975)
chr4 (295-424)||(4552152-4552281)
chr4 (267-424)||(2017457-2017622)
chr4 (363-468)||(2521907-2522012)
chr4 (299-424)||(40969195-40969320)
chr4 (363-467)||(36947553-36947657)
chr4 (363-424)||(4728593-4728654)
chr4 (460-550)||(9694203-9694292)
chr4 (460-549)||(14044461-14044551)
chr4 (270-424)||(46645536-46645699)
chr4 (295-380)||(32005881-32005966)
chr4 (295-380)||(1585676-1585761)
chr4 (460-544)||(32828280-32828365)
chr4 (368-424)||(10058577-10058633)
chr4 (296-420)||(9694055-9694191)
chr4 (463-541)||(11826945-11827024)
chr4 (461-550)||(10715794-10715884)
chr4 (461-550)||(10929564-10929654)
chr4 (366-420)||(14044395-14044449)
chr4 (463-544)||(31364254-31364336)
chr4 (368-420)||(9003607-9003659)
chr4 (463-550)||(10058656-10058744)
chr4 (267-369)||(34672298-34672394)
chr4 (462-549)||(46645742-46645830)
chr4 (366-424)||(2576209-2576268)
chr4 (461-549)||(4552323-4552412)
chr4 (296-369)||(11827101-11827174)
chr4 (363-424)||(31929051-31929112)
chr4 (461-549)||(40969362-40969451)
chr4 (466-515)||(49745199-49745248)
chr4 (460-547)||(2521789-2521877)
chr4 (463-515)||(9003695-9003747)
chr4 (295-358)||(2576126-2576189)
chr4 (461-534)||(32006021-32006095)
chr4 (508-549)||(6255442-6255483)
chr4 (297-346)||(9809762-9809811)
chr4 (296-361)||(15034556-15034621)
chr4 (461-544)||(43003078-43003162)
chr4 (460-527)||(50100007-50100075)
[»] chr8 (19 HSPs)
chr8 (268-484)||(34282857-34283081)
chr8 (18-109)||(29012345-29012436)
chr8 (363-488)||(13243128-13243253)
chr8 (295-424)||(24964999-24965128)
chr8 (295-424)||(28928025-28928155)
chr8 (295-412)||(27321882-27321999)
chr8 (267-420)||(38214689-38214850)
chr8 (363-453)||(39431653-39431743)
chr8 (460-549)||(38214862-38214952)
chr8 (298-424)||(21138078-21138204)
chr8 (363-424)||(36406509-36406570)
chr8 (373-458)||(31500811-31500902)
chr8 (461-542)||(27321758-27321840)
chr8 (295-369)||(3384106-3384180)
chr8 (465-549)||(36406378-36406463)
chr8 (442-485)||(43843317-43843360)
chr8 (463-544)||(35384259-35384341)
chr8 (442-491)||(12478241-12478290)
chr8 (463-515)||(31500737-31500789)
[»] chr3 (32 HSPs)
chr3 (270-464)||(53068194-53068383)
chr3 (300-468)||(33179101-33179268)
chr3 (266-488)||(41218327-41218569)
chr3 (267-424)||(28311213-28311378)
chr3 (295-424)||(53651870-53651999)
chr3 (267-424)||(44047520-44047685)
chr3 (388-515)||(41358543-41358670)
chr3 (267-390)||(12909763-12909887)
chr3 (298-420)||(53987839-53987961)
chr3 (267-424)||(25391844-25392009)
chr3 (294-424)||(14461036-14461166)
chr3 (315-479)||(47511609-47511773)
chr3 (296-424)||(7500917-7501057)
chr3 (363-424)||(26371041-26371102)
chr3 (267-398)||(44625634-44625773)
chr3 (332-420)||(9600359-9600447)
chr3 (295-424)||(37516602-37516743)
chr3 (463-549)||(26278475-26278562)
chr3 (298-424)||(38239428-38239554)
chr3 (359-420)||(26278399-26278460)
chr3 (461-549)||(28311420-28311509)
chr3 (463-550)||(26370930-26371018)
chr3 (460-549)||(53987973-53988064)
chr3 (366-420)||(35077267-35077321)
chr3 (461-544)||(53652041-53652125)
chr3 (463-549)||(37516766-37516853)
chr3 (461-549)||(14461208-14461297)
chr3 (463-542)||(25391741-25391821)
chr3 (299-370)||(43700228-43700299)
chr3 (442-491)||(41199863-41199912)
chr3 (461-549)||(43700082-43700171)
chr3 (461-544)||(33178986-33179070)
[»] chr1 (34 HSPs)
chr1 (299-544)||(24646024-24646269)
chr1 (267-458)||(9526988-9527174)
chr1 (298-468)||(4642046-4642216)
chr1 (267-424)||(27584033-27584198)
chr1 (298-424)||(25011556-25011682)
chr1 (295-424)||(27460662-27460791)
chr1 (367-544)||(24745450-24745626)
chr1 (266-424)||(37154010-37154176)
chr1 (395-546)||(49898442-49898611)
chr1 (296-468)||(6802072-6802248)
chr1 (266-424)||(25007393-25007559)
chr1 (267-424)||(44305342-44305507)
chr1 (295-424)||(14727284-14727425)
chr1 (296-430)||(44238872-44239007)
chr1 (267-370)||(49898345-49898456)
chr1 (265-407)||(4773935-4774085)
chr1 (363-468)||(34459143-34459248)
chr1 (267-424)||(31844640-31844817)
chr1 (363-424)||(6331720-6331781)
chr1 (270-422)||(48940438-48940598)
chr1 (463-549)||(31844530-31844617)
chr1 (460-549)||(4774108-4774198)
chr1 (461-549)||(14727467-14727556)
chr1 (295-369)||(33469016-33469090)
chr1 (363-424)||(8239325-8239388)
chr1 (461-549)||(27460816-27460904)
chr1 (463-550)||(33468859-33468947)
chr1 (463-542)||(9527196-9527276)
chr1 (461-549)||(25007601-25007690)
chr1 (461-549)||(44305549-44305638)
chr1 (461-544)||(37153884-37153968)
chr1 (463-549)||(34459260-34459347)
chr1 (304-370)||(1428454-1428520)
chr1 (461-550)||(25011425-25011515)
[»] chr7 (35 HSPs)
chr7 (296-488)||(19377350-19377554)
chr7 (296-458)||(814971-815133)
chr7 (312-461)||(42439557-42439706)
chr7 (297-487)||(28693997-28694198)
chr7 (296-488)||(21932735-21932926)
chr7 (336-468)||(21688122-21688254)
chr7 (359-488)||(4843334-4843463)
chr7 (296-420)||(30852310-30852434)
chr7 (365-468)||(3012346-3012449)
chr7 (352-468)||(38128969-38129085)
chr7 (296-450)||(41759602-41759768)
chr7 (267-420)||(5991432-5991602)
chr7 (349-423)||(38991181-38991255)
chr7 (298-424)||(26722958-26723096)
chr7 (364-424)||(23704489-23704549)
chr7 (267-424)||(35300448-35300625)
chr7 (460-549)||(22206575-22206665)
chr7 (460-549)||(22228074-22228164)
chr7 (460-515)||(5991344-5991399)
chr7 (460-549)||(3012458-3012548)
chr7 (315-369)||(5850707-5850761)
chr7 (460-549)||(30852446-30852536)
chr7 (460-544)||(7873114-7873199)
chr7 (367-420)||(7873232-7873285)
chr7 (404-468)||(41862334-41862398)
chr7 (296-420)||(25688202-25688338)
chr7 (463-549)||(28693892-28693979)
chr7 (460-549)||(814862-814952)
chr7 (461-550)||(21932630-21932720)
chr7 (296-369)||(22206761-22206834)
chr7 (296-369)||(22227905-22227978)
chr7 (465-534)||(26722863-26722933)
chr7 (460-544)||(25688105-25688190)
chr7 (373-409)||(22206709-22206745)
chr7 (373-409)||(22227994-22228030)
[»] chr6 (28 HSPs)
chr6 (304-549)||(339311-339565)
chr6 (267-424)||(10397812-10397977)
chr6 (295-421)||(23663782-23663908)
chr6 (295-424)||(34249033-34249162)
chr6 (267-424)||(1781042-1781207)
chr6 (363-468)||(2836176-2836281)
chr6 (296-420)||(2960652-2960776)
chr6 (363-424)||(2941257-2941318)
chr6 (299-420)||(14938934-14939055)
chr6 (365-424)||(9696092-9696151)
chr6 (461-550)||(9696193-9696283)
chr6 (402-488)||(34188856-34188942)
chr6 (365-424)||(9046935-9046994)
chr6 (461-549)||(14938811-14938900)
chr6 (461-544)||(9046809-9046893)
chr6 (363-421)||(15122078-15122136)
chr6 (363-424)||(15528981-15529042)
chr6 (460-550)||(2960809-2960900)
chr6 (464-549)||(10397698-10397784)
chr6 (461-515)||(28614328-28614382)
chr6 (296-369)||(28614458-28614531)
chr6 (300-369)||(34188762-34188831)
chr6 (463-542)||(1780939-1781019)
chr6 (461-544)||(15529084-15529168)
chr6 (461-543)||(2941360-2941443)
chr6 (461-549)||(15122181-15122270)
chr6 (435-468)||(31188321-31188354)
chr6 (466-549)||(31188201-31188285)
[»] chr5 (48 HSPs)
chr5 (296-468)||(15503883-15504055)
chr5 (296-468)||(16667458-16667642)
chr5 (266-424)||(30248894-30249060)
chr5 (361-485)||(767314-767438)
chr5 (267-468)||(17192634-17192842)
chr5 (296-479)||(36234536-36234719)
chr5 (267-424)||(34443896-34444061)
chr5 (366-468)||(21069046-21069148)
chr5 (363-471)||(12267371-12267479)
chr5 (267-420)||(16567721-16567894)
chr5 (363-424)||(35468937-35468998)
chr5 (391-471)||(13942741-13942821)
chr5 (395-468)||(8214628-8214701)
chr5 (461-549)||(14832700-14832789)
chr5 (363-424)||(33006941-33007002)
chr5 (363-424)||(34846401-34846462)
chr5 (363-421)||(15675347-15675405)
chr5 (461-549)||(15504086-15504175)
chr5 (270-420)||(32953680-32953850)
chr5 (313-424)||(7159610-7159721)
chr5 (298-369)||(37779633-37779704)
chr5 (300-420)||(43228655-43228787)
chr5 (460-549)||(16567927-16568017)
chr5 (461-549)||(1672376-1672465)
chr5 (461-549)||(2476502-2476591)
chr5 (267-420)||(7162096-7162264)
chr5 (462-549)||(7161973-7162061)
chr5 (460-543)||(37552050-37552134)
chr5 (460-543)||(37654880-37654964)
chr5 (295-370)||(2476370-2476445)
chr5 (461-543)||(21069158-21069241)
chr5 (463-549)||(33007025-33007112)
chr5 (266-400)||(42989462-42989605)
chr5 (461-542)||(35469040-35469122)
chr5 (298-370)||(6900742-6900814)
chr5 (462-549)||(13942642-13942730)
chr5 (306-370)||(8214687-8214751)
chr5 (462-549)||(15675451-15675539)
chr5 (460-515)||(6900903-6900958)
chr5 (299-346)||(13695020-13695067)
chr5 (463-549)||(34846485-34846572)
chr5 (460-515)||(37779779-37779834)
chr5 (461-515)||(32953592-32953646)
chr5 (461-515)||(34444103-34444157)
chr5 (295-353)||(34846321-34846379)
chr5 (298-369)||(37607424-37607497)
chr5 (395-468)||(6900800-6900873)
chr5 (376-424)||(12317964-12318012)
[»] scaffold0618 (2 HSPs)
scaffold0618 (267-421)||(1639-1788)
scaffold0618 (461-549)||(1833-1922)
[»] scaffold0021 (2 HSPs)
scaffold0021 (366-509)||(109234-109377)
scaffold0021 (366-468)||(112193-112292)
[»] scaffold0075 (3 HSPs)
scaffold0075 (296-424)||(6878-7006)
scaffold0075 (295-424)||(11491-11619)
scaffold0075 (461-549)||(11661-11750)
[»] scaffold0638 (2 HSPs)
scaffold0638 (296-420)||(4066-4202)
scaffold0638 (463-549)||(4217-4304)
[»] scaffold0108 (1 HSPs)
scaffold0108 (442-491)||(20934-20983)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 269 - 468
Target Start/End: Original strand, 12000467 - 12000663
Alignment:
Q  269 ggggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggat- 367  Q
    |||||||||||| ||||||||||| |||    ||| || ||| ||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||||     
T  12000467 ggggcggagccaacccccagctagcctg----ggcacaactccaactttctttgtaacaagtccagccattagtagaagttttagcttttcctgcggatg 12000562  T
Q  368 ttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaa 467  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12000563 ttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatataggtccctaggtgaggtaataccttaggattttaggatccgcaggaa 12000662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 298 - 488
Target Start/End: Original strand, 17148751 - 17148940
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||| || |||||| ||| ||| |||||||||||||||||| ||||||||||||||||    
T  17148751 ccaggctcagctccaactttctttgtagcaagctcagccattactataacttttaggtttacctgcggatttttgtgtaaattccgcaggaaacacattt 17148850  T
Q  398 ccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaa 488  Q
    ||| ||||||||| ||||||||||||| || |||||||| |||||| |||||||||||||| ||||||||||||  ||||||  |||||||    
T  17148851 cctgcagattttg-caaggatttaggttcccaggtgagggaataccataggattttaggatccgcaggaaatgtggaattatctgcaggaa 17148940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 296 - 538
Target Start/End: Complemental strand, 33909489 - 33909246
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    |||||| || ||||| ||||||||||||| |||| |||| ||||||||||| |||||||||||||| || ||||||||| |||||  |||||| | ||||    
T  33909489 gcccagacttagctccaactttctttgtagcaagctcagtcattactagaatttttagtttttcctgcgaatttttgtgaaaattctgcaggagaaacat 33909390  T
Q  396 ttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaaggacata 495  Q
    ||||| |||||||| |||| ||||||||| |  ||||||||||||||| |||||||||||||| | |||||||||| |||||||| ||| ||||||  ||    
T  33909389 ttcctgcagatttttccaaagatttaggttctcaggtgaggtaataccataggattttaggatccacaggaaatgtgaaattatttgcatgaaggatgta 33909290  T
Q  496 atattttgcgat-aattttttgcctaaactctatataatttctg 538  Q
    | |||||||||| || |||||||| | |||||||| ||||||||    
T  33909289 acattttgcgataaagtttttgcccagactctataaaatttctg 33909246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 296 - 468
Target Start/End: Complemental strand, 304270 - 304100
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||| ||||||||| ||||||||||||| |||| |||||||||||||||| |||||| ||||||| |||| ||  ||||||||||||||||||||||||    
T  304270 gcccaagctcagctccaactttctttgtagcaagctcagccattactagaacttttagcttttcctgcggagtt--gtgtaaatttcgcaggaaacacat 304173  T
Q  396 ttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    ||| | ||||||||||||||||||||||| || | ||||||||| ||| || ||||||||||| |||||||||    
T  304172 ttcttgcagattttgccaaggatttaggttcccatgtgaggtaacaccataagattttaggatccgcaggaaa 304100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 303 - 488
Target Start/End: Original strand, 41010450 - 41010635
Alignment:
Q  303 ctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttc 402  Q
    |||||||| |||||| ||||||  ||||||||| |||||||||| ||||||||||| || ||||||||||| ||||||  |||||||||||||||||| |    
T  41010450 ctcagctccaactttttttgtactaagttcagctattactagaacttttagttttttctgcggatttttgtataaattctgcaggaaacacatttcctgc 41010549  T
Q  403 agattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaa 488  Q
    ||||||| | |||||||||||| || | |||||||||||||  | ||||||||||| |||||||||||| ||||||| || |||||    
T  41010550 agattttactaaggatttaggttcccatgtgaggtaataccacaagattttaggatccgcaggaaatgtgaaattatccgtaggaa 41010635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 295 - 424
Target Start/End: Complemental strand, 41115018 - 41114889
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||||||| |||| ||||||||||||| |||| ||| |||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  41115018 tgcccaggctcggctccaactttctttgtagcaagctcaaccattactagaatttttagtttttcctgcggattttcgtgtaaattccgcaggaaacaca 41114919  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  41114918 tttcctgcagattttgccaaggatttaggt 41114889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 295 - 424
Target Start/End: Complemental strand, 6800034 - 6799905
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||||||| |||| ||||||||||||| |||| ||| |||||||||||| |||||  ||||||| |||||||||||||||||| |||||||||||||    
T  6800034 tgcccaggctcggctccaactttctttgtagcaagctcaaccattactagaatttttaacttttcctgcggatttttgtgtaaattccgcaggaaacaca 6799935  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  6799934 tttcctgcagattttgccaaggatttaggt 6799905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 13203734 - 13203863
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    |||||||||||||||| ||||||||||||| ||||  || |||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||     
T  13203734 tgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacg 13203833  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  13203834 tttcctgcagattttgccaaggatttaggt 13203863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 296 - 488
Target Start/End: Original strand, 25562891 - 25563095
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt------------ttgtgtaaatttcg 383  Q
    ||||||||||||||| ||||||||||||| ||||  || |||||||||||| |||||| ||||||| |||||||            || |||||||| ||    
T  25562891 gcccaggctcagctccaactttctttgtagcaagcccaaccattactagaacttttagcttttcctgcggatttatctgcggattgttttgtaaattccg 25562990  T
Q  384 caggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgc 483  Q
    ||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| | |||||||||| ||||||| | |    
T  25562991 caggaaatacatttcctgcagattttgccaaggatttaggttcccaggtgaggtaataccataggattttaggatccacaggaaatgtgaaattatcccc 25563090  T
Q  484 aggaa 488  Q
    |||||    
T  25563091 aggaa 25563095  T

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Target: chr2; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 296 - 424
Target Start/End: Complemental strand, 18299290 - 18299162
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    |||| |||||| ||| ||||||||||||| ||||  || |||||||||||| |||||  ||||| | |||||||||||||||||| ||||||||||||||    
T  18299290 gcccgggctcacctccaactttctttgtagcaagcccaaccattactagaatttttaacttttcttgcggatttttgtgtaaattccgcaggaaacacat 18299191  T
Q  396 ttccttcagattttgccaaggatttaggt 424  Q
    ||||| |||||||||||||||||||||||    
T  18299190 ttcctgcagattttgccaaggatttaggt 18299162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 368 - 458
Target Start/End: Original strand, 15651247 - 15651337
Alignment:
Q  368 ttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggat 458  Q
    ||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15651247 ttttgtgtaaattccgcaggaaacacatttcctgcgtattttgccaaggatttaggtccctaggtgaggtaatgccttaggattttaggat 15651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 22572846 - 22572720
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    ||||||||||||| ||||||||||||| ||||   | ||||||||||||  ||||| ||||||| || ||||||||||||||| | ||||||||||||||    
T  22572846 ccaggctcagctccaactttctttgtagcaagcctaaccattactagaatatttagcttttcctgcgaatttttgtgtaaattccccaggaaacacattt 22572747  T
Q  398 ccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||||||||||||||||||    
T  22572746 cctgcagattttgccaaggatttaggt 22572720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 29257310 - 29257459
Alignment:
Q  267 caggggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacgga 366  Q
    ||||||||||||||||||| ||||||||||    |||||||||| |||||||||||||  |||  ||  ||||| || || |||||  ||||||| ||||    
T  29257310 caggggcggagccaccccc-agctagtctg----ggctcagctccaactttctttgtagaaagcccaatcattattaaaatttttaccttttccttcgga 29257404  T
Q  367 tttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattta 421  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  29257405 tttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaattta 29257459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 364 - 463
Target Start/End: Original strand, 17249354 - 17249453
Alignment:
Q  364 ggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgca 463  Q
    ||||||||||||||||| | ||||||||||||||| |  |||||||||||||||||||||| |  |||||||||||||||||||||||||||||| ||||    
T  17249354 ggatttttgtgtaaattccacaggaaacacatttcttgtagattttgccaaggatttaggttctcaggtgaggtaataccttaggattttaggatccgca 17249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 466 - 549
Target Start/End: Original strand, 12000700 - 12000784
Alignment:
Q  466 aaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||  |||||||||||| ||||||||| ||||    
T  12000700 aaatgtaaaattattcgcaggaaggacgtaacattttgcgataatttttttgcctaggctctatataattcctggctccgccact 12000784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 534
Target Start/End: Original strand, 15651384 - 15651452
Alignment:
Q  466 aaatgtaaaattattcgcaggaaggacataatattttgcgataattttttgcctaaactctatataatt 534  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |  ||||||||||||    
T  15651384 aaatgtaaaattattcgcaggaaggacgtaacattttgcgataaatttttgccgaggctctatataatt 15651452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 385
Target Start/End: Original strand, 2475792 - 2475879
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgca 385  Q
    |||| |||||||| |||||||||||||  |||  ||||||||||||||| |||||| || || | |||||||||||||||||| ||||    
T  2475792 ccagactcagctccaactttctttgtaggaagcccagccattactagaacttttagcttgtcttgcggatttttgtgtaaattccgca 2475879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 549
Target Start/End: Complemental strand, 304069 - 303980
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt-gcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||||||  | ||  |||  ||||||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  304069 gcaggaaatgtgaaattattcgcagataagaagtaacgttttgcgataatttttttgcccaaactctataaaatttctggctccgccact 303980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 468
Target Start/End: Complemental strand, 16221089 - 16221016
Alignment:
Q  395 tttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    |||||| | |||||||| ||||||||| || || ||||||| ||||||||||||||||||||||  ||||||||    
T  16221089 tttcctgcggattttgctaaggatttaagttcccaggtgagataataccttaggattttaggatctgcaggaaa 16221016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 29257504 - 29257593
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| ||||||||||||| |||||  |||  ||||||||| ||||||||||| | |||||||| |||| ||||||||| ||||    
T  29257504 gcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggctccgccact 29257593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 41010650 - 41010739
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||| | | |||||||| |||| || |||||||||||    
T  41010650 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgtccacactctataaaattcctagctccgtcact 41010739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 2475943 - 2475998
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    |||||||||||| |||||||||||||||||||  |||  |||||||||||||||||    
T  2475943 cgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttt 2475998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 543
Target Start/End: Complemental strand, 41114847 - 41114764
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctcc 543  Q
    ||||||||||| |||||||||||| ||||||  |||  ||||||||| ||||||||||| || ||||||| |||| ||||||||    
T  41114847 gcaggaaatgtgaaattattcgcatgaaggaagtaacgttttgcgataaattttttgcccaagctctataaaattcctggctcc 41114764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 27702021 - 27702079
Alignment:
Q  300 aggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    ||||||||||| |||||||| |||||||| | |||||||||||| ||||||||| ||||    
T  27702021 aggctcagctccaactttctctgtaacaaatccagccattactaaaagttttagctttt 27702079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 15429213 - 15429274
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||| ||||||||| |||||||||||  ||||||   ||||||| |||||||||||||    
T  15429213 cggattttggtgtaaattccgcaggaaacatgtttcctgtggattttgtcaaggatttaggt 15429274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 529
Target Start/End: Complemental strand, 18299120 - 18299051
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctata 529  Q
    ||||||||||| |||||||||||||||||||  |||  |||| |||| ||||||||||| ||||| ||||    
T  18299120 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataaattttttgcccaaactttata 18299051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 515
Target Start/End: Complemental strand, 45444430 - 45444377
Alignment:
Q  462 caggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    |||||||||| |||||||||||||||||||  |||| |||||| |||| |||||    
T  45444430 caggaaatgtgaaattattcgcaggaaggaagtaatgttttgcaataaattttt 45444377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 549
Target Start/End: Original strand, 13203910 - 13203994
Alignment:
Q  466 aaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||| ||||||||||| |||||||  ||| |||||||||| ||||||||||  |  ||||||| |||| ||||||||| ||||    
T  13203910 aaatgtgaaattattcgctggaaggaagtaacattttgcgataaattttttgctcatgctctataaaattcctggctccgccact 13203994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 300 - 515
Target Start/End: Complemental strand, 41972581 - 41972366
Alignment:
Q  300 aggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttcc 399  Q
    ||||||||||| ||||||||||||| ||||   | |||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  41972581 aggctcagctccaactttctttgtagcaagccgaaccattactagaacttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacatttcc 41972482  T
Q  400 ttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaaggacataatat 499  Q
    | |||||||||||||||||| |||| || ||||||||||||| |||| ||||||||||| ||||| |||||| |||||||||||||||||||  |||  |    
T  41972481 tgcagattttgccaaggattaaggttcccaggtgaggtaatatcttaagattttaggatccgcagaaaatgtgaaattattcgcaggaaggaagtaacgt 41972382  T
Q  500 tttgcgataatttttt 515  Q
    |||||||||| |||||    
T  41972381 tttgcgataaattttt 41972366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 298 - 485
Target Start/End: Original strand, 49745009 - 49745196
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    ||||||||||||| |||||||||| ||||||||  ||||||||||||||||||||  |||||||   |||||||||||||||| || |||||||||||||    
T  49745009 ccaggctcagctccaactttctttataacaagtctagccattactagaagttttaccttttcctgtagatttttgtgtaaattccgtaggaaacacattt 49745108  T
Q  398 ccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcag 485  Q
     || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  49745109 tctgcagattttgccaaggatttaggttcctaggtgaggtaataccttaggattttaggatccgcaggaaatgtgaaattatccgcag 49745196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 31364102 - 31364231
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||||||| |||| ||||||||||||| ||| | || |||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||    
T  31364102 tgcccaggctcggctccaactttctttgtagcaaatccaaccattactagaaattttagtttttcctgcggatttttgtgtaaattccgcaggaaacaca 31364201  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  31364202 tttcctgcagattttgccaaggatttaggt 31364231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 266 - 488
Target Start/End: Original strand, 52373669 - 52373898
Alignment:
Q  266 tcaggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttt 357  Q
    |||||||||||||||||||| ||||||||||        |||||||||||||| |||||||||| ||  ||| |||| ||||||||||| |||||  |||    
T  52373669 tcaggggcggagccaccccc-agctagtctgggcactagcccaggctcagctccaactttctttatagtaagctcagtcattactagaacttttaacttt 52373767  T
Q  358 tcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttagga 457  Q
    | || | |||||||||||||||| ||||| ||||  ||||| | ||||||||| || |||||||||| || |||||||||||||||||||||||||||||    
T  52373768 ttctgcagatttttgtgtaaattccgcagaaaacgtatttcttgcagattttgtcagggatttaggttcccaggtgaggtaataccttaggattttagga 52373867  T
Q  458 tgcgcaggaaatgtaaaattattcgcaggaa 488  Q
    | |||| ||||||| ||||||| ||||||||    
T  52373868 tccgcatgaaatgtgaaattatccgcaggaa 52373898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 267 - 468
Target Start/End: Original strand, 25237495 - 25237716
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| |||||||||||||  |||| ||| ||||||||||| ||||||  |||    
T  25237495 caggggcggagccaccccccagctagcctgagcactagcccaggctcagctccaactttctttgtagtaagtccagtcattactagaacttttagcgttt 25237594  T
Q  359 cctacggattt------------ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaatacctta 446  Q
     || |||||||            ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||    
T  25237595 tctgcggatttacctgcggaattttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcccaggtgaggtaatacctta 25237694  T
Q  447 ggattttaggatgcgcaggaaa 468  Q
     ||||||||||| |||||||||    
T  25237695 tgattttaggattcgcaggaaa 25237716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 267 - 418
Target Start/End: Original strand, 50383819 - 50383978
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||| ||||  ||||||||||||||| |||||| ||||    
T  50383819 caggggcggagccaccccccagctagcctgggcactggcccaggctcagctccaactttctttgtagcaagcccagccattactagaacttttagctttt 50383918  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggat 418  Q
    ||| ||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||    
T  50383919 cctgcggatgtttgcgtaaattttgcaggaaacacatttcctgcagattttgccaaggat 50383978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 296 - 458
Target Start/End: Original strand, 8901771 - 8901932
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||||||||||||| |||||||||||||  |||  ||||||||  ||||| |||||  ||||||| | |||||||||||||| | ||||||||||||||    
T  8901771 gcccaggctcagctccaactttctttgtagaaagcccagccatttttagaacttttaacttttcctgcagatttttgtgtaaactccgcaggaaacacat 8901870  T
Q  396 ttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggat 458  Q
    ||||| ||||||||||||||||||||| |  | | ||||||||||||||||||||||||||||    
T  8901871 ttcctgcagattttgccaaggatttagatttcca-gtgaggtaataccttaggattttaggat 8901932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 10715585 - 10715752
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaa-caagttcagccattactagaagttttagtttt 357  Q
    |||||||||||||||||||||||||| |||        ||||||||| |||| |||||||||||||| ||||  || |||||||||||| |||||| |||    
T  10715585 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaatttttagcttt 10715684  T
Q  358 tcctacggatttttgtgtaaatttcgcaggaaacacatt-tccttcagattttgccaaggatttaggt 424  Q
    |||| |||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||    
T  10715685 tcctgcggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggt 10715752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 10929355 - 10929522
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaa-caagttcagccattactagaagttttagtttt 357  Q
    |||||||||||||||||||||||||| |||        ||||||||| |||| |||||||||||||| ||||  || |||||||||||| |||||| |||    
T  10929355 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtaagcaagcccaaccattactagaatttttagcttt 10929454  T
Q  358 tcctacggatttttgtgtaaatttcgcaggaaacacatt-tccttcagattttgccaaggatttaggt 424  Q
    |||| |||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||    
T  10929455 tcctgcggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggt 10929522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 312 - 463
Target Start/End: Original strand, 50099824 - 50099975
Alignment:
Q  312 aactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgc 411  Q
    |||||||||||||  ||||||| |||||||||||  |||||| |||| || |||||||||||||||||| || ||||||  ||||| || || |||||||    
T  50099824 aactttctttgtagtaagttcaaccattactagagcttttagctttttctgcggatttttgtgtaaattccgtaggaaattcattttctgcaaattttgc 50099923  T
Q  412 caaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgca 463  Q
     |||||||||||| || |||||| ||||||||||||||||||||||| ||||    
T  50099924 taaggatttaggttcccaggtgaagtaataccttaggattttaggatccgca 50099975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 4552152 - 4552281
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    |||||||||||||||| ||||||||||||| ||||  |  |||||||||||| |||||| ||||||| ||||||| |||||||||| |||||||||   |    
T  4552152 tgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcggatttgtgtgtaaattccgcaggaaatgta 4552251  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  4552252 tttcctgcagattttgccaaggatttaggt 4552281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 2017622 - 2017457
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||| ||||| ||||||||||||| |||| ||  |||||||||||| |||||| ||||    
T  2017622 caggggcggagccaccccccagctagcctgggctagtgcccaggcttagctccaactttctttgtagcaagctctaccattactagaatttttagctttt 2017523  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||||||||||||| |||||||||   ||||||  |||||||||||||| ||||||||    
T  2017522 cctgcggatttttgtgtaaattccgcaggaaatgtatttcccgcagattttgccaagtatttaggt 2017457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 363 - 468
Target Start/End: Complemental strand, 2522012 - 2521907
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgc 462  Q
    |||||||||||||||| | |||||||||||||||||||  |||||||  ||||||||||||| || ||||||||||||| |||||||||||||||| |||    
T  2522012 cggatttttgtgtaaagtccgcaggaaacacatttcctgtagattttatcaaggatttaggttcccaggtgaggtaatatcttaggattttaggatccgc 2521913  T
Q  463 aggaaa 468  Q
    ||||||    
T  2521912 aggaaa 2521907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 299 - 424
Target Start/End: Original strand, 40969195 - 40969320
Alignment:
Q  299 caggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttc 398  Q
    |||||||||||  ||||||||||||| ||||| || ||||||  |||| |||||| ||||||| ||||||||||||||||||  |||||||||||||||     
T  40969195 caggctcagcttcaactttctttgtagcaagtccaaccattatgagaatttttagcttttcctgcggatttttgtgtaaattctgcaggaaacacatttt 40969294  T
Q  399 cttcagattttgccaaggatttaggt 424  Q
    || ||||||||| ||| |||||||||    
T  40969295 ctgcagattttgtcaatgatttaggt 40969320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 363 - 467
Target Start/End: Original strand, 36947553 - 36947657
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgc 462  Q
    ||||||||||| ||||||  |||||||||| ||||||| | |||||||||||| |||||||| || ||||| |||||||||||||||||||||||| |||    
T  36947553 cggatttttgtataaattctgcaggaaacatatttcctgcggattttgccaagaatttaggttcccaggtgtggtaataccttaggattttaggatccgc 36947652  T
Q  463 aggaa 467  Q
    |||||    
T  36947653 aggaa 36947657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 4728593 - 4728654
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  4728593 cggatttttgagtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggt 4728654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 460 - 550
Target Start/End: Original strand, 9694203 - 9694292
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    |||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||| |  ||||| | |||||||||||||| |||||    
T  9694203 cgcaggaaatgtcaaattattcgcaagaaggaaataacattttgcgataattttttgcccaggctcta-aaaatttctggctccgccacta 9694292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 14044461 - 14044551
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||| ||||||||| |||||||||  ||| |||||||||||| ||||||||| | |||||||| |||||||||||||| ||||    
T  14044461 cgcaggaaatgtgaaattattctcaggaaggaggtaacattttgcgataatttttttgcccatactctataaaatttctggctccgccact 14044551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 424
Target Start/End: Original strand, 46645536 - 46645699
Alignment:
Q  270 gggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt----------- 358  Q
    |||||||||||||||| |||||||  ||||||||||||||| ||||| ||||||| ||||  || |||||||||||| |||||| ||||               
T  46645536 gggcggagccaccccc-agctagt--gcccaggctcagctccaacttcctttgtagcaagcccaaccattactagaatttttagctttttctgcggattt 46645632  T
Q  359 -cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
     ||| ||||||||||||||||||  |||||||||||||||| | ||||||||||||||  |||||||    
T  46645633 acctgcggatttttgtgtaaattctgcaggaaacacatttcatgcagattttgccaagagtttaggt 46645699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 32005881 - 32005966
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatt 380  Q
    |||||||||||||||| ||||||||||||| ||||  |  |||||| ||||| |||||| ||||||| ||||||||||||||||||    
T  32005881 tgcccaggctcagctccaactttctttgtagcaagccctaccattattagaatttttagcttttcctgcggatttttgtgtaaatt 32005966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 1585676 - 1585761
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatt 380  Q
    |||||||||||||||  ||||||||||||| ||||  |  |||||||||||| |||||| ||||||| | ||||||||||||||||    
T  1585676 tgcccaggctcagcttcaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcagatttttgtgtaaatt 1585761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 544
Target Start/End: Original strand, 32828280 - 32828365
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||||||||||||||| ||||||||||  |||||||||| ||||| ||||||||| |  | ||||| ||||||||||||||    
T  32828280 cgcaggaaatgtaaaattatttgcaggaaggaagtaatattttgtgataatttttttgcccaggccctataaaatttctggctccg 32828365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 10058577 - 10058633
Alignment:
Q  368 ttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||||||||||| ||||||||||||||||||  |||||||| ||||||||||||||    
T  10058577 ttttgtgtaaattccgcaggaaacacatttccagcagattttaccaaggatttaggt 10058633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 9694055 - 9694191
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt------------ttgtgtaaatttcg 383  Q
    ||||||||||||||| || ||||||||||  ||| |||||||||||||||| |||||  |||| || |||||||            || |||||||| ||    
T  9694055 gcccaggctcagctccaattttctttgtagtaagctcagccattactagaacttttaactttttctgcggatttatttgcggaattttatgtaaattccg 9694154  T
Q  384 caggaaacacatttccttcagattttgccaaggattt 420  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  9694155 caggaaacacatttcctgcagattttgcctaggattt 9694191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 541
Target Start/End: Complemental strand, 11827024 - 11826945
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggct 541  Q
    ||||||||| |||||||||||||||||||  ||| ||||| |||||||| |||||||||  ||||||| |||||||||||    
T  11827024 aggaaatgtgaaattattcgcaggaaggaagtaacattttacgataatttttttgcctaggctctataaaatttctggct 11826945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 461 - 550
Target Start/End: Original strand, 10715794 - 10715884
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||||| ||||||||||| |  ||||||| |||  ||||||||| |||||    
T  10715794 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccaggctctataaaatacctggctccgccacta 10715884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 461 - 550
Target Start/End: Original strand, 10929564 - 10929654
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||||| ||||||||||| |  ||||||| |||  ||||||||| |||||    
T  10929564 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccaggctctataaaatacctggctccgccacta 10929654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 14044395 - 14044449
Alignment:
Q  366 atttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  14044395 atttttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 14044449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 463 - 544
Target Start/End: Original strand, 31364254 - 31364336
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| |  ||||||| ||||||||||||||    
T  31364254 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccatgctctataaaatttctggctccg 31364336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 9003607 - 9003659
Alignment:
Q  368 ttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  9003607 ttttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 9003659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 550
Target Start/End: Original strand, 10058656 - 10058744
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| ||||||||| |||||    
T  10058656 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccacta 10058744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 369
Target Start/End: Original strand, 34672298 - 34672394
Alignment:
Q  267 caggggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccatta-ctagaagttttagtttttcctacgg 365  Q
    |||||||||| |||||||||||||||     ||||||||||||| ||||||||||||||||||| |||  ||||  |||||||||||| || || |||||    
T  34672298 caggggcggaaccaccccccagctag-----ccaggctcagctccaactttctttgtaacaagtccag--attaggtagaagttttagcttctcttacgg 34672390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 549
Target Start/End: Original strand, 46645742 - 46645830
Alignment:
Q  462 caggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||| |||||||||||||||||||  |||  ||||||||| |||||||| || | |||||||| |||| ||||||||| ||||    
T  46645742 caggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttttcccagactctataaaattcctggctccgccact 46645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 424
Target Start/End: Original strand, 2576209 - 2576268
Alignment:
Q  366 atttttgtgtaaatttcgcaggaaacacatttccttcaga-ttttgccaaggatttaggt 424  Q
    |||||||| |||||| ||||||||||||||||||| |||| ||||||||||||| |||||    
T  2576209 atttttgtataaattccgcaggaaacacatttcctgcagatttttgccaaggatgtaggt 2576268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 4552323 - 4552412
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||| | ||||||||  |||  ||||||||| ||||||||||| | |||||||| |||| ||||||||| ||||    
T  4552323 gcaggaaatgtgaaattatttgtaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggctccgccact 4552412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 11827174 - 11827101
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    ||||||||||||||| || ||||||||||  ||||  |||||||||||||| |||||| |||| || |||||||    
T  11827174 gcccaggctcagctccaattttctttgtagtaagtctagccattactagaacttttagctttttctgcggattt 11827101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 31929112 - 31929051
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||||||  ||||||||  ||| |||||||||||||| || ||||||||||||||||||||    
T  31929112 cggattttattgtaaattctgcaagaaacacatttcctgcaaattttgccaaggatttaggt 31929051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 40969362 - 40969451
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||| |||| | ||||||||||||| |||||  |||  ||||||||||| ||||||||| || ||||||| |||| ||||||||||||||    
T  40969362 gcagaaaatatgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccaagctctataaaattgctggctccgtcact 40969451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 49745199 - 49745248
Alignment:
Q  466 aaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||| |||||    
T  49745199 aaatgtaaaattattcgcaggaaggacgtaacattttacgataaattttt 49745248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 547
Target Start/End: Complemental strand, 2521877 - 2521789
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtca 547  Q
    |||||||||||| |||||||||||||||||||  |||  |||| |||| ||||||||||| |   |||||| |||| ||||||||||||    
T  2521877 cgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataaattttttgcccatgttctataaaattcctggctccgtca 2521789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 515
Target Start/End: Original strand, 9003695 - 9003747
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    ||||||||| |||||||||||| ||||||  ||| ||||||||||||||||||    
T  9003695 aggaaatgtgaaattattcgcaagaaggaagtaacattttgcgataatttttt 9003747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 2576126 - 2576189
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||| ||||||||||||| ||||  || ||||||| |||| |||||| ||||    
T  2576126 tgcccaggctcagctccaactttctttgtagcaagcccaaccattacaagaatttttagctttt 2576189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 534
Target Start/End: Original strand, 32006021 - 32006095
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatt 534  Q
    ||||||||||| |||||||||| ||||||||  |||  ||||||||| ||||||||||| | |||||||| ||||    
T  32006021 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaatt 32006095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 549
Target Start/End: Original strand, 6255442 - 6255483
Alignment:
Q  508 aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||    
T  6255442 aatttttcgcccaaactctatataatttctggctccgccact 6255483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 9809762 - 9809811
Alignment:
Q  297 cccaggctcagctctaactttctttgtaacaagttcagccattactagaa 346  Q
    |||||||| ||||| ||||||||||||| ||||| |||||||||| ||||    
T  9809762 cccaggcttagctcaaactttctttgtagcaagtccagccattacaagaa 9809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 15034621 - 15034556
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcct 361  Q
    ||||| ||||||||  ||||||||||||||||||  || |||||||||||| |||| | |||||||    
T  15034621 gcccaagctcagcttcaactttctttgtaacaagcccaaccattactagaacttttcgcttttcct 15034556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 544
Target Start/End: Complemental strand, 43003162 - 43003078
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||||| |||||||||||||||| ||  |||  || ||| || ||||||||| | | |||||||| ||||||||||||||    
T  43003162 gcaggaaatgtgaaattattcgcaggaaagaagtaacgttctgcaataaattttttgtccagactctataaaatttctggctccg 43003078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 527
Target Start/End: Original strand, 50100007 - 50100075
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactcta 527  Q
    |||||||||||| |||||||||| ||||||||  |||  ||||||||| |||||||| || ||||||||    
T  50100007 cgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttacccaaactcta 50100075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 268 - 484
Target Start/End: Complemental strand, 34283081 - 34282857
Alignment:
Q  268 aggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttc 359  Q
    ||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||| |||||    
T  34283081 aggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtagcaagtccagtcattactagaacttttagcttttc 34282982  T
Q  360 ctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatg 459  Q
     | |||||||| |||||||||  |||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||| ||||||||||||||     
T  34282981 ttgcggattttagtgtaaattctgcaggaaacacatttcctgcagattttgccaaggatttaagttccgaggtgaggtaataccataggattttaggatc 34282882  T
Q  460 cgcaggaaatgtaaaattattcgca 484  Q
    |||||||||||| ||||||| ||||    
T  34282881 cgcaggaaatgtgaaattatccgca 34282857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 29012436 - 29012345
Alignment:
Q  18 aatagaaaatactaatgttaaatacattgtaaagttaactaaaatcttataaatatatttgactccaataaataaaacttattttatttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29012436 aatagaaaatactaatgttaaatacattgtaaagttaactaaaatcttataaatatatttgactccaataaataaaacttattttatttttt 29012345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 363 - 488
Target Start/End: Original strand, 13243128 - 13243253
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgc 462  Q
    |||| ||||||||||||| |||||||||||||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||    
T  13243128 cggagttttgtgtaaattccgcaggaaacacatttcctgtagattttgccaaggatttaggttcccaggtgaggtaataccttaggattttaggatccgc 13243227  T
Q  463 aggaaatgtaaaattattcgcaggaa 488  Q
    | ||||||| ||||||| ||||||||    
T  13243228 aagaaatgtgaaattatccgcaggaa 13243253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 24964999 - 24965128
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||||||| |||| ||||||||||||| ||||  || |||||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||    
T  24964999 tgcccaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacaca 24965098  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| ||||||||||| |||||||||||    
T  24965099 tttcctgcagattttgcctaggatttaggt 24965128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 28928025 - 28928155
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||||||| |||| ||||||||||||| ||||   | |||||||||||| |||||| ||||||| |||| ||||||||||||| |||||||||||||    
T  28928025 tgcccaggctcggctccaactttctttgtagcaagcctaaccattactagaatttttagcttttcctgcggagttttgtgtaaattccgcaggaaacaca 28928124  T
Q  395 ttt-ccttcagattttgccaaggatttaggt 424  Q
    ||| ||| |||||||||||||||||||||||    
T  28928125 tttccctgcagattttgccaaggatttaggt 28928155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 27321999 - 27321882
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    |||||||||||||||| || |||||||||| ||||  |||||||||||| || |||||||||||||| ||||||||| |||||||| |||||||||||||    
T  27321999 tgcccaggctcagctccaattttctttgtagcaagcccagccattactaaaacttttagtttttcctgcggatttttatgtaaattccgcaggaaacaca 27321900  T
Q  395 tttccttcagattttgcc 412  Q
    |||||| || ||||||||    
T  27321899 tttcctgcaaattttgcc 27321882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 267 - 420
Target Start/End: Original strand, 38214689 - 38214850
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        ||| |||||||||| || |||||||||| ||||| |||||| |||||||| |||||| ||||    
T  38214689 caggggcggagccaccccccagctagcctgggcactagcccgggctcagctccaattttctttgtagcaagtccagccaatactagaacttttagctttt 38214788  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    ||| ||||||||| ||||||||  |||  ||||||||||||| ||||||||| | |||||||    
T  38214789 cctgcggatttttatgtaaattctgcataaaacacatttcctgcagattttgtctaggattt 38214850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 363 - 453
Target Start/End: Complemental strand, 39431743 - 39431653
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggatttt 453  Q
    |||| ||||||||||||| || |||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  39431743 cggagttttgtgtaaattccgtaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaataccataggatttt 39431653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 38214862 - 38214952
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||| |||||||||||||||| ||  ||| |||||||||||| ||||||||| || ||||||| |||||||||||||| ||||    
T  38214862 cgcaggaaatgtgaaattattcgcaggaatgaagtaacattttgcgataatttttttgcccaagctctataaaatttctggctccgccact 38214952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 21138204 - 21138078
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    ||||||||||||   |||||||||||| ||||   | ||||||||||||  | | | ||||||| |||||||  |||||||||||||| ||||||| |||    
T  21138204 ccaggctcagcttctactttctttgtagcaagcctaaccattactagaacctcttgcttttcctgcggatttgggtgtaaatttcgcatgaaacacgttt 21138105  T
Q  398 ccttcagattttgccaaggatttaggt 424  Q
    ||| |  ||||||||||||||||||||    
T  21138104 cctgcgaattttgccaaggatttaggt 21138078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 36406570 - 36406509
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||| |||||||||||| || |||||||||||||||| |||||||||||||||||| ||||    
T  36406570 cggatatttgtgtaaattccgtaggaaacacatttcctgcagattttgccaaggattgaggt 36406509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 373 - 458
Target Start/End: Complemental strand, 31500902 - 31500811
Alignment:
Q  373 tgtaaatttcgcaggaaacacatttccttcagattttgccaagga------tttaggtccctaggtgaggtaataccttaggattttaggat 458  Q
    ||||||||  |||||||||||||||||| | ||||||||||||||      ||||| | || ||||||||||||||||||||||||||||||    
T  31500902 tgtaaattctgcaggaaacacatttcctacggattttgccaaggatttatgtttagattccaaggtgaggtaataccttaggattttaggat 31500811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 461 - 542
Target Start/End: Complemental strand, 27321840 - 27321758
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctc 542  Q
    |||| |||||| |||||||||||||||||||  ||| |||||||||||||| ||||||| |  ||||||| ||||||||||||    
T  27321840 gcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttctggctc 27321758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 3384180 - 3384106
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    |||||||||||||||| ||||||||||||| ||||| |  |||||| ||||| |||||| |||| || |||||||    
T  3384180 tgcccaggctcagctccaactttctttgtagcaagtcctaccattattagaatttttagctttttctgcggattt 3384106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 549
Target Start/End: Complemental strand, 36406463 - 36406378
Alignment:
Q  465 gaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| ||||||||| ||||    
T  36406463 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccact 36406378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 485
Target Start/End: Original strand, 43843317 - 43843360
Alignment:
Q  442 ccttaggattttaggatgcgcaggaaatgtaaaattattcgcag 485  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||    
T  43843317 ccttaggattttaggatccgcaggaaatgtgcaattattcgcag 43843360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 544
Target Start/End: Complemental strand, 35384341 - 35384259
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||| |||||||||| ||||||||  ||   ||||||||||| ||||||||| || ||||||| |||| |||||||||    
T  35384341 aggaaatgtgaaattattcgtaggaaggaagtaccgttttgcgataaattttttgcccaagctctataaaattcctggctccg 35384259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 12478241 - 12478290
Alignment:
Q  442 ccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaagga 491  Q
    ||||||||||||||||| ||||||||||||  ||||||  ||||||||||    
T  12478241 ccttaggattttaggatccgcaggaaatgtgcaattatctgcaggaagga 12478290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 31500789 - 31500737
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    |||||||||||||||||||| | ||||||  ||||||||||| |||| |||||    
T  31500789 aggaaatgtaaaattattcgtatgaaggaagtaatattttgcaataaattttt 31500737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 270 - 464
Target Start/End: Original strand, 53068194 - 53068383
Alignment:
Q  270 gggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    |||||||||||||||||| |||| |||    ||| |||||| ||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||    
T  53068194 gggcggagccaccccccatctagcctg----ggc-cagctccaactttctttgtaacaagtccagccattactagaagttttaacttttcctgcggattt 53068288  T
Q  370 ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcag 464  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||    
T  53068289 ttgtgtaaattccacaggaaacacatttcctgcagattttgccaagaatttaggttcctaggtgagataataccttaggattttaggattcgcag 53068383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 300 - 468
Target Start/End: Complemental strand, 33179268 - 33179101
Alignment:
Q  300 aggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttcc 399  Q
    ||||||||||| |||||| |||||| ||||| ||||||||||||||| |||||| ||||||| || ||||||||||||||| ||||||||||||||||||    
T  33179268 aggctcagctccaactttttttgtagcaagtccagccattactagaacttttagcttttcctgcgaatttttgtgtaaattccgcaggaaacacatttcc 33179169  T
Q  400 ttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    | ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||    
T  33179168 tgcagattttgccaaggatttaggttcccaggtgaggtaataccataggattttaggat-cgcaggaaa 33179101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 266 - 488
Target Start/End: Complemental strand, 41218569 - 41218327
Alignment:
Q  266 tcaggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttt 357  Q
    ||||||||||||||||||||||||||| |||        ||||||||||||||  |||||| ||||| ||||  ||||||||||||||| |||||| |||    
T  41218569 tcaggggcggagccaccccccagctagcctgagcactagcccaggctcagctccgactttccttgtagcaagcccagccattactagaacttttagcttt 41218470  T
Q  358 tcctacggattt------------ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaatacctt 445  Q
    |||| |||||||            |||| |||||| ||||||||||||||||||| | |||||||||||| |||||||| |  | |||||||||||||||    
T  41218469 tcctgcggatttacttgcgcatttttgtctaaattccgcaggaaacacatttcctgccgattttgccaagaatttaggttctcatgtgaggtaatacctt 41218370  T
Q  446 aggattttaggatgcgcaggaaatgtaaaattattcgcaggaa 488  Q
    ||||||||||||| ||||||||||||||||||||  |||||||    
T  41218369 aggattttaggatccgcaggaaatgtaaaattatctgcaggaa 41218327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 28311213 - 28311378
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||||||||  |  |||||||||||| |||||||||||    
T  28311213 caggggcggagccaccccccagctagcctggaatagtgcccaggctcagctccaactttctttgtaacaagccctaccattactagaatttttagttttt 28311312  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||||||||||||| |||||||||   |||||||  ||||||||||||||||||||||    
T  28311313 cctgcggatttttgtgtaaattccgcaggaaatgtatttcctgtagattttgccaaggatttaggt 28311378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 53651870 - 53651999
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    |||||||||||||||| ||||||||||||| ||||  |  |||||||||||| |||||| ||||||| |||||||||||||||||| |||||||||  ||    
T  53651870 tgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaatgca 53651969  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  53651970 tttcctgcagattttgccaaggatttaggt 53651999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 44047520 - 44047685
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||| ||||  |  |||||||||||| |||||| ||||    
T  44047520 caggggcggagccaccccccagctagcctgggctagtacccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagctttt 44047619  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||||||||||||| |||||||||   ||||||| |||||||||||||||||||||||    
T  44047620 cctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggt 44047685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 388 - 515
Target Start/End: Complemental strand, 41358670 - 41358543
Alignment:
Q  388 aaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcagga 487  Q
    ||||||||||||| | ||||||||||| ||||||||| |  ||||||||||||||||||||||||| |||| ||||||||||||  |||||| |||||||    
T  41358670 aaacacatttcctgcggattttgccaatgatttaggttctcaggtgaggtaataccttaggatttttggatccgcaggaaatgtgcaattatccgcagga 41358571  T
Q  488 aggacataatattttgcgataatttttt 515  Q
    |||| ||||  |||||||||||||||||    
T  41358570 aggaaataacgttttgcgataatttttt 41358543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 12909763 - 12909887
Alignment:
Q  267 caggggcggagccaccccccagctagtctgc-ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacgg 365  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| ||||||||||||| ||||  |  |||||||||||| |||||| ||||||| |||    
T  12909763 caggggcggagccaccccccagctagcctgggccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcgg 12909862  T
Q  366 atttttgtgtaaatttcgcaggaaa 390  Q
    ||||||||||||||| |||||||||    
T  12909863 atttttgtgtaaattccgcaggaaa 12909887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 298 - 420
Target Start/End: Original strand, 53987839 - 53987961
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    ||||||||||||  || ||||||||||   || ||| |||||||||||| |||||| ||||||| ||||||||| |||||||| ||||||||||||||||    
T  53987839 ccaggctcagcttcaattttctttgtagtcagctcaaccattactagaacttttagcttttcctgcggatttttatgtaaattccgcaggaaacacattt 53987938  T
Q  398 ccttcagattttgccaaggattt 420  Q
    ||| ||||||||||| |||||||    
T  53987939 cctgcagattttgcctaggattt 53987961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 25392009 - 25391844
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| ||||||||| ||| ||||  |  |||||||||||| |||||| ||||    
T  25392009 caggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttcttcgtagcaagccctaccattactagaatttttagctttt 25391910  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||||||||||||| |||| ||||   ||||| | || ||||||||||||||||||||    
T  25391909 cctgcggatttttgtgtaaattccgcaagaaatgtatttcttgcaaattttgccaaggatttaggt 25391844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 294 - 424
Target Start/End: Original strand, 14461036 - 14461166
Alignment:
Q  294 ctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacac 393  Q
    ||||||||||||||||| || |||||||||| ||||  |  |||||||||||| |||||  ||||||| ||||||||| |||||||| |||||||||       
T  14461036 ctgcccaggctcagctccaattttctttgtagcaagccctaccattactagaatttttaacttttcctgcggatttttatgtaaattccgcaggaaatgt 14461135  T
Q  394 atttccttcagattttgccaaggatttaggt 424  Q
    || |||| |||||||||||||||||||||||    
T  14461136 atgtcctgcagattttgccaaggatttaggt 14461166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 315 - 479
Target Start/End: Complemental strand, 47511773 - 47511609
Alignment:
Q  315 tttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaa 414  Q
    |||||||||||||||| |||||||||||||||  ||| | ||||||| ||||||||||| ||||||| | |||||||||||||||| | |||||||| ||    
T  47511773 tttctttgtaacaagtccagccattactagaacctttcgcttttcctgcggatttttgtataaattttgaaggaaacacatttcctgcggattttgctaa 47511674  T
Q  415 ggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattat 479  Q
     |||||| ||  |  | |||  |||||||||| ||||||||||| | ||  ||||||| ||||||    
T  47511673 agatttaagtttcctgatgaaataataccttaagattttaggatccacataaaatgtacaattat 47511609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 296 - 424
Target Start/End: Original strand, 7500917 - 7501057
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt------------ttgtgtaaatttcg 383  Q
    |||||||||| |||| ||||||||||||| ||||  || |||||||||||| |||||| ||||||| |||||||            ||||||||||| ||    
T  7500917 gcccaggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggatttacatgcggatgtttgtgtaaattccg 7501016  T
Q  384 caggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  7501017 caggaaacacatttcctacagattttgccaaggatttaggt 7501057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 26371102 - 26371041
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26371102 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggt 26371041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 267 - 398
Target Start/End: Original strand, 44625634 - 44625773
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        ||||||||| |||| ||||||||||||| ||||  || | |||||||||| |||||| ||||    
T  44625634 caggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaatttttagctttt 44625733  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttc 398  Q
    ||| | ||||||||||||||||  | ||||||||||||||    
T  44625734 cctgcagatttttgtgtaaattctggaggaaacacatttc 44625773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 9600359 - 9600447
Alignment:
Q  332 cagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    ||||||||||||||| |||| | ||||||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||  |||||||    
T  9600359 cagccattactagaacttttggcttttcctgcggatttttatgtaaattctgcaggaaacacatttcctgcagattttgcttaggattt 9600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 37516602 - 37516743
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt------------ttgtgtaaatttc 382  Q
    ||||||||||| | || ||||||||||||| ||||| || |||||||||||| |||||| ||||||| |||||||            |||||||||||      
T  37516602 tgcccaggctcggttccaactttctttgtagcaagtccaaccattactagaatttttagcttttcctgcggatttacctgcggaattttgtgtaaattct 37516701  T
Q  383 gcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  37516702 gcaggaaacacatttcctgcagattttgccaaggatctaggt 37516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 463 - 549
Target Start/End: Original strand, 26278475 - 26278562
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| |||||||||||| ||||||  ||  |||||||||||| |||||||||||||||||||| ||||||| |||||| ||||    
T  26278475 aggaaatgtgaaattattcgcaagaaggaagtatcattttgcgataatttttttgcctaaactctataaaatttcttgctccgccact 26278562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 424
Target Start/End: Original strand, 38239428 - 38239554
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    ||||||||| || | ||| |||||||| |||||||||||||||||| ||  | | | ||||  |  ||||||| |||||||||  |||||||||||||||    
T  38239428 ccaggctcaacttttactatctttgtagcaagttcagccattactataacctctcgctttttttgtggattttagtgtaaattctgcaggaaacacattt 38239527  T
Q  398 ccttcagattttgccaaggatttaggt 424  Q
     || | |||||||||||||||||||||    
T  38239528 tctgcggattttgccaaggatttaggt 38239554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 26278399 - 26278460
Alignment:
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    ||||||||||||| |||||||| || |||||||||||||||| ||||||||||| |||||||    
T  26278399 cctacggatttttatgtaaattccggaggaaacacatttcctgcagattttgcctaggattt 26278460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 28311420 - 28311509
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||| ||||||||  |||| ||||||||| ||||||||||| | |||||||| |||| ||||||||| ||||    
T  28311420 gcaggaaatgtgaaattattcgtaggaaggaagtaatgttttgcgataaattttttgcccagactctataaaattcctggctccgccact 28311509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 463 - 550
Target Start/End: Complemental strand, 26371018 - 26370930
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| | |||||||| |||| ||||||||| |||||    
T  26371018 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggctccgccacta 26370930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 53987973 - 53988064
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa--ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||| |||||||||||||||||||  ||| ||||||| ||||  |||||||||   |||||||| |||||||||||||| ||||    
T  53987973 cgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataaatttttttgcccggactctataaaatttctggctccgccact 53988064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 35077267 - 35077321
Alignment:
Q  366 atttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  35077267 atttttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 35077321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 544
Target Start/End: Original strand, 53652041 - 53652125
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||||| |||||||||| |||||| || |||| ||||||||| ||||||||| | | |||||||| |||| |||||||||    
T  53652041 gcaggaaatgtgaaattattcgtaggaagaacgtaatgttttgcgataaattttttgtccagactctataaaattcctggctccg 53652125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 549
Target Start/End: Original strand, 37516766 - 37516853
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| ||||||||| ||||    
T  37516766 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccact 37516853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 14461208 - 14461297
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||||||||||||| ||||||||  |||  ||||| ||| ||||||||||| |  ||||||| |||| ||||||||| ||||    
T  14461208 gcaggaaatgtaaaattattcgtaggaaggaagtaacgttttgtgataaattttttgcccaggctctataaaattcctggctccgccact 14461297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 542
Target Start/End: Complemental strand, 25391821 - 25391741
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctc 542  Q
    ||||||||| |||||||||| | ||||||  |||| ||||||||| ||||||||||| || ||||||| |||| |||||||    
T  25391821 aggaaatgtgaaattattcgtaagaaggaagtaatgttttgcgataaattttttgcccaagctctataaaattcctggctc 25391741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 43700299 - 43700228
Alignment:
Q  299 caggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttt 370  Q
    ||||||| |||| ||||||||||||| ||||  || |||||||||||| |||||| ||||||| | ||||||    
T  43700299 caggctcggctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcagatttt 43700228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 41199912 - 41199863
Alignment:
Q  442 ccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaagga 491  Q
    |||||| |||||||||| ||||||||||||  |||||| |||||||||||    
T  41199912 ccttagaattttaggatccgcaggaaatgtgcaattatccgcaggaagga 41199863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 549
Target Start/End: Complemental strand, 43700171 - 43700082
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgata-attttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| ||||||||||||| || ||  |||  |||||||||| ||||||| || || ||||||| |||||||| ||||| ||||    
T  43700171 gcaggaaatgtgaaattattcgcagaaaagaagtaacgttttgcgatatattttttacccaagctctataaaatttctgactccgccact 43700082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 544
Target Start/End: Complemental strand, 33179070 - 33178986
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccg 544  Q
    |||| |||||| |||||||||||||||| ||  |||  ||||||||| ||||||||||| | |||||||| |||| ||| |||||    
T  33179070 gcagaaaatgtgaaattattcgcaggaatgaagtaacgttttgcgataaattttttgcccagactctataaaattcctgactccg 33178986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 299 - 544
Target Start/End: Original strand, 24646024 - 24646269
Alignment:
Q  299 caggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttc 398  Q
    |||||||| ||| ||||||||||||| ||| | || |||||||||||| |||||| |||||||  ||||||||||||| ||| || ||||||||||||||    
T  24646024 caggctcaactccaactttctttgtagcaact-caaccattactagaacttttagcttttcctgtggatttttgtgtacattccgtaggaaacacatttc 24646122  T
Q  399 cttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaaggacataata 498  Q
    || ||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |||||||||| | |||||||||||| ||||||  ||| |    
T  24646123 ctgcagattttgccaaggatttaggttcccaggtgaggtaatacctttggatttttggatccgcaggaaatttgaaattattcgcatgaaggaagtaaca 24646222  T
Q  499 ttttgcgataa-ttttttgcctaaactctatataatttctggctccg 544  Q
    ||||| ||||| ||||||||| |  ||||||| |||| |||||||||    
T  24646223 ttttgagataatttttttgcccaggctctataaaattcctggctccg 24646269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 267 - 458
Target Start/End: Original strand, 9526988 - 9527174
Alignment:
Q  267 caggggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacgga 366  Q
    |||||||||||||||||||||| |     |||||||| |||||| ||||||||||||| ||||  ||||||||||||||| |||||| ||||||| ||||    
T  9526988 caggggcggagccaccccccagtt-----gcccaggcccagctccaactttctttgtagcaagcccagccattactagaacttttagcttttcctgcgga 9527082  T
Q  367 tttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggat 458  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  9527083 ttttggtgtaaatttcacaggaaacacatctcctgcagattttgccaaggatttaggttcccaggtgaggtaatatcttaggattttaggat 9527174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 298 - 468
Target Start/End: Complemental strand, 4642216 - 4642046
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||| ||||||| ||||||    
T  4642216 ccaggctcagctccgactttctttgtagcaagttcagccattactagaacttttagcttttcctgcggatttttatgtaaatttcacaggaaatacattt 4642117  T
Q  398 ccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    | | ||||||||| |||||||||||||  | |||||||||||||||||||||||||||||| |||||||||    
T  4642116 cttgcagattttgtcaaggatttaggtttcgaggtgaggtaataccttaggattttaggatccgcaggaaa 4642046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 27584198 - 27584033
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        ||||||||| |||| ||||||||||||| ||||   | |||||||||||| |||||| ||||    
T  27584198 caggggcggagccaccccccagctagcctgggctagcgcccaggctcggctccaactttctttgtagcaagccaaaccattactagaatttttagctttt 27584099  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  27584098 cctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggt 27584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 25011682 - 25011556
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacattt 397  Q
    ||||||||||||| ||||||||||||| ||||  || |||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  25011682 ccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacattt 25011583  T
Q  398 ccttcagattttgccaaggatttaggt 424  Q
     || |||||||||||||||||||||||    
T  25011582 tctgcagattttgccaaggatttaggt 25011556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 27460662 - 27460791
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    |||||||||||||||| ||||||||||||| ||||  || |||||||||||| |||||| ||||| | |||||||||||||||||| || ||||||||||    
T  27460662 tgcccaggctcagctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcttgcggatttttgtgtaaattccgaaggaaacaca 27460761  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  27460762 tttcctgcagattttgccaaggatttaggt 27460791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 367 - 544
Target Start/End: Original strand, 24745450 - 24745626
Alignment:
Q  367 tttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcagga 466  Q
    ||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||    ||||||||||||||| |||||||||||||| |||||||    
T  24745450 tttttgtgtaaattctgcaggaaacacattttctgcagattttgccaaggatttaggttttaaggtgaggtaataccctaggattttaggatccgcagga 24745549  T
Q  467 aatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccg 544  Q
    ||||| |||||||||||| |||| |  ||| |  ||||||||| ||||||||| | |||||||| |||| |||||||||    
T  24745550 aatgtgaaattattcgcatgaagaaagtaaca--ttgcgataatttttttgcccagactctataaaattcctggctccg 24745626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 266 - 424
Target Start/End: Complemental strand, 37154176 - 37154010
Alignment:
Q  266 tcaggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttt 357  Q
    ||||||||||||||||||||||||||| |||        |||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||| |||    
T  37154176 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagctctaccattactagaatttttagcttt 37154077  T
Q  358 tcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||| |||||||||||||||||| |||||||||   ||||||| |||||||||||||||||||||||    
T  37154076 tcctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggt 37154010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 49898442 - 49898611
Alignment:
Q  395 tttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcg-----------------caggaaatgtaaaatt 477  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||                 |||||||||| |||||    
T  49898442 tttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgcaagaaagatatatccacaggaaatgtgaaatt 49898541  T
Q  478 attcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtc 546  Q
    ||||||||||||||| ||| |||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  49898542 attcgcaggaaggacgtaacattttgcgataaattttttgcccagactctatataatttctggctccgtc 49898611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 296 - 468
Target Start/End: Complemental strand, 6802248 - 6802072
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||||||||| ||   |||||||||||| |||| |||||||||||||||| || | | ||||||| ||||||||| |||||||| | ||||||||||||    
T  6802248 gcccaggctcaacttctactttctttgtagcaagctcagccattactagaacttctcgcttttcctgcggatttttctgtaaattccacaggaaacacat 6802149  T
Q  396 ttccttca----gattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    ||||| |     ||||||||||||||||||||| || |||||||||||||||||| ||||||||||| | |||||||    
T  6802148 ttcctgcctgcggattttgccaaggatttaggttcccaggtgaggtaataccttacgattttaggatcctcaggaaa 6802072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 266 - 424
Target Start/End: Original strand, 25007393 - 25007559
Alignment:
Q  266 tcaggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttt 357  Q
    ||||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||| ||||  |  |||||||||||| |||||| |||    
T  25007393 tcaggggcggagccaccccccagctagcctgggctaatgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttttagcttt 25007492  T
Q  358 tcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||| |||||||||||||||||| |||| ||||   ||||||| |||||||||||||||||||||||    
T  25007493 tcctgcggatttttgtgtaaattccgcaagaaatgtatttcctgcagattttgccaaggatttaggt 25007559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 44305342 - 44305507
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| |||||||||||||  |||  |  | |||||||||| |||||| ||||    
T  44305342 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtaggaagccctacaattactagaatttttagctttt 44305441  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||||||||||||| |||||||||   ||||||| |||||||||||||||||||||||    
T  44305442 cctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggt 44305507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 14727284 - 14727425
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt------------ttgtgtaaatttc 382  Q
    |||||||||||||||| ||||||||||||| ||||| || |||||||||||| |||||| ||||||| |||||||            ||||||||||| |    
T  14727284 tgcccaggctcagctccaactttctttgtagcaagtccaaccattactagaatttttagcttttcctgcggatttacctgcggagttttgtgtaaattcc 14727383  T
Q  383 gcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  14727384 gcaggaaacacatttcctgcagattttgccaaggatttaggt 14727425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 296 - 430
Target Start/End: Complemental strand, 44239007 - 44238872
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacgga-tttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||||||||||| |||||||||||||  |||  ||||||||||||||| |||||| ||||| | |||| ||||| ||||||||  ||||||||||||    
T  44239007 gcccaggctcagctccaactttctttgtagaaagcccagccattactagaaattttagcttttcttgcggattttttttgtaaattctgcaggaaacaca 44238908  T
Q  395 tttccttcagattttgccaaggatttaggtccctag 430  Q
    |||| |  |||||||||||||||||||||| |||||    
T  44238907 tttcttgtagattttgccaaggatttaggttcctag 44238872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 49898345 - 49898456
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  49898345 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaactttctttgtaacaagttcagccattactagaagttttagctttt 49898444  T
Q  359 cctacggatttt 370  Q
    ||| | ||||||    
T  49898445 cctgcagatttt 49898456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 265 - 407
Target Start/End: Original strand, 4773935 - 4774085
Alignment:
Q  265 ttcaggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttt 356  Q
    |||||||||||||||||||||||||||| |||        ||||| |||| ||| || ||| |||||| ||||  ||||||||||||||| |||||| ||    
T  4773935 ttcaggggcggagccaccccccagctagcctgggcactagcccagactcaactccaattttttttgtagcaagcccagccattactagaacttttagctt 4774034  T
Q  357 ttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagatt 407  Q
    ||||| ||||| ||| |||||||| ||||||||||||||||||| ||||||    
T  4774035 ttcctgcggatatttatgtaaattccgcaggaaacacatttcctgcagatt 4774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 468
Target Start/End: Original strand, 34459143 - 34459248
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgc 462  Q
    |||||| ||||| || || || |||||||||||||||| |||||||||||||||||||| || |  |||||||||||||||||||||||||||||| |||    
T  34459143 cggattgttgtggaatttccgtaggaaacacatttcctgcagattttgccaaggatttaagttctcaggtgaggtaataccttaggattttaggatccgc 34459242  T
Q  463 aggaaa 468  Q
    | ||||    
T  34459243 aagaaa 34459248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 31844817 - 31844640
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||| ||| |||||||||| || |||   || |||||||||||| |||||| ||||    
T  31844817 caggggcggagccaccccccagctagcctgatctagtgcccaggctcaactccaactttctttctagcaaacccaaccattactagaaattttagctttt 31844718  T
Q  359 cctacggattt------------ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||            ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  31844717 cctacggatttacctgcagatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggt 31844640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 6331720 - 6331781
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  6331720 cggatttttgtgtaaattccgcaggaaacacatttcctacagattttgccaaggatttaggt 6331781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 422
Target Start/End: Complemental strand, 48940598 - 48940438
Alignment:
Q  270 gggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    |||||||||||| |||||||||| |||    |||||||||| ||| ||||||||| ||||   |||||||||||||| |||||| ||||||| |||||||    
T  48940598 gggcggagccactccccagctagcctg----ggctcagctccaacattctttgtagcaagccaagccattactagaacttttagcttttcctgcggattt 48940503  T
Q  370 ------------ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttag 422  Q
                ||||||||||| ||||||||||||||||| | ||||||||| |||||||||||    
T  48940502 atttgcggatttttgtgtaaattccgcaggaaacacatttcatgcagattttgtcaaggatttag 48940438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 463 - 549
Target Start/End: Complemental strand, 31844617 - 31844530
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| |||||||||||||||||||  ||| |||||||||| ||||||||||| | |||||||| |||| ||||||||| ||||    
T  31844617 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccagactctataaaattcctggctccgccact 31844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 4774108 - 4774198
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||| ||||||| ||||||||||||||||| |  ||| |||||||||||| ||||||||| | |||||||| |||||||||||||| ||||    
T  4774108 cgcaagaaatgtgaaattattcgcaggaagaaagtaacattttgcgataatttttttgcccagactctataaaatttctggctccgccact 4774198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 14727467 - 14727556
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||||||||||||  |||  ||||||||||| ||||||||| |  ||||||| |||||||||||||| ||||    
T  14727467 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaatttctggctccgccact 14727556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 33469090 - 33469016
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    |||| ||||||||||| |||||||||| || ||| |||| |||||||||||| |||||| ||||||| |||||||    
T  33469090 tgcctaggctcagctccaactttctttatagcaaattcaaccattactagaaattttagcttttcctgcggattt 33469016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 8239325 - 8239388
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacat--ttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| ||||||||| | ||  ||||| |||||||||||||||||||||||    
T  8239325 cggatttttgtgtaaattccgcaggaaatatatatttcctgcagattttgccaaggatttaggt 8239388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 27460816 - 27460904
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||||||| ||||| || |  ||||||| ||||  |||||||| ||||    
T  27460816 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttcccaggctctataaaattcttggctccgccact 27460904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 550
Target Start/End: Complemental strand, 33468947 - 33468859
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| ||||||||| |||||    
T  33468947 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccacta 33468859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 463 - 542
Target Start/End: Original strand, 9527196 - 9527276
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggaca-taatattttgcgat-aattttttgcctaaactctatataatttctggctc 542  Q
    ||||||||| |||||||||||||||| |||| |||  ||||||||| ||||||||||| | |||||||| ||||||||||||    
T  9527196 aggaaatgtgaaattattcgcaggaa-gacagtaacgttttgcgataaattttttgcccatactctataaaatttctggctc 9527276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 25007601 - 25007690
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||| ||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| ||||||||| ||||    
T  25007601 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccact 25007690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 44305549 - 44305638
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||| ||||||||  |||  ||||||||||| ||||||||| |  ||||||| |||| ||||||||| ||||    
T  44305549 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaattcctggctccgccact 44305638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 544
Target Start/End: Complemental strand, 37153968 - 37153884
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||||| |||||||||| ||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| |||||||||    
T  37153968 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccg 37153884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 549
Target Start/End: Original strand, 34459260 - 34459347
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| ||||||||||  |||||||  |||  ||||| ||||| ||||||||| | |||||||| |||| ||||||||||||||    
T  34459260 aggaaatgtgaaattattcgtgggaaggaagtaacgttttgtgataaattttttgcccagactctataaaattcctggctccgtcact 34459347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 1428520 - 1428454
Alignment:
Q  304 tcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttt 370  Q
    ||||||| ||||||||||||| ||||  |  |||||||||||| |||||||||||||| | ||||||    
T  1428520 tcagctccaactttctttgtagcaagccctaccattactagaatttttagtttttcctgcagatttt 1428454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 550
Target Start/End: Complemental strand, 25011515 - 25011425
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctccgtcacta 550  Q
    |||| ||||| ||||||||||||| ||||||  |||  ||||||||||||| ||||||| | | |||||| |||||||||| ||| |||||    
T  25011515 gcagaaaatgcaaaattattcgcatgaaggaagtaacgttttgcgataatttttttgcccagattctataaaatttctggcgccgccacta 25011425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 296 - 488
Target Start/End: Original strand, 19377350 - 19377554
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttc------------ctacggatttttgtgtaaatttcg 383  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||  |||||            || ||||| |||||| ||||| ||    
T  19377350 gcccaggctcagctccaactttctttgtaacaactccagccattactagtagttttaacttttcttgcagatttacctgcggatgtttgtggaaattccg 19377449  T
Q  384 caggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgc 483  Q
     |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||    
T  19377450 aaggaaatacatttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgcaggaaatgtgaaattatccgc 19377549  T
Q  484 aggaa 488  Q
    |||||    
T  19377550 aggaa 19377554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 296 - 458
Target Start/End: Complemental strand, 815133 - 814971
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||||||||||||| ||||||||||||| ||| |  |||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||| ||||    
T  815133 gcccaggctcagctccaactttctttgtagcaaatctagccattactagaacttttagcttttcctacggatttttgtgtaaattccgcagaaaatacat 815034  T
Q  396 ttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggat 458  Q
    ||| | |||||||||||||| |||||||| || | ||||||||||||||||| ||||||||||    
T  815033 ttcttgcagattttgccaagaatttaggttcccaagtgaggtaataccttagaattttaggat 814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 312 - 461
Target Start/End: Complemental strand, 42439706 - 42439557
Alignment:
Q  312 aactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgc 411  Q
    ||||||||||||| || | |||||||||||||||| |||||||||| ||| | || |||||||||||||||||||||||||||||| || ||||||||||    
T  42439706 aactttctttgtagcatgctcagccattactagaacttttagttttacctgcagagttttgtgtaaatttcgcaggaaacacattttctgcagattttgc 42439607  T
Q  412 caaggatttaggtccctaggtgaggtaataccttaggattttaggatgcg 461  Q
    ||||||||||||| |||||| ||||||||||| ||| ||||||| |||||    
T  42439606 caaggatttaggttcctaggagaggtaataccatagaattttagaatgcg 42439557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 297 - 487
Target Start/End: Complemental strand, 28694198 - 28693997
Alignment:
Q  297 cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttccta-----------cggatttttgtgtaaatttcgca 385  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||| |  ||| |||            ||||||||||||||||||  |||    
T  28694198 cccaggctcagctccaactttctttgtagcaagttccgccattactagaactttaaactttgcctcggatttagctgcggatttttgtgtaaattctgca 28694099  T
Q  386 ggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcag 485  Q
    ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||    
T  28694098 ggaaacacatttcctgcagattttgcccaggatttaggttcccaggtgaggtaataccataggattttaggatccgcaggaaatgtgaaattatccgcag 28693999  T
Q  486 ga 487  Q
    ||    
T  28693998 ga 28693997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 296 - 488
Target Start/End: Complemental strand, 21932926 - 21932735
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||||||||| ||| ||||||||||||| ||||  || ||||||||| || |||||  ||||||| || || |||||||||||| ||||||||||||||    
T  21932926 gcccaggctcaactccaactttctttgtagcaagcccaaccattactaaaacttttaacttttcctgcg-atatttgtgtaaattccgcaggaaacacat 21932828  T
Q  396 ttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaa 488  Q
    ||||| ||||||||| |||||||||||||  | ||||||||||||||| ||||||||| |||| |||| ||| ||| ||||||| ||||||||    
T  21932827 ttcctgcagattttgtcaaggatttaggtttccaggtgaggtaataccataggatttttggatccgcatgaattgtgaaattatccgcaggaa 21932735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 336 - 468
Target Start/End: Original strand, 21688122 - 21688254
Alignment:
Q  336 cattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgag 435  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||    |||||||    
T  21688122 cattactagaacttttagcttttcctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgcgaaggatttaggttatcaggtgag 21688221  T
Q  436 gtaataccttaggattttaggatgcgcaggaaa 468  Q
     |||||||||||||||||| ||| |||||||||    
T  21688222 ataataccttaggattttaagatccgcaggaaa 21688254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 359 - 488
Target Start/End: Original strand, 4843334 - 4843463
Alignment:
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggat 458  Q
    ||||||||| |||||||| ||| |||| |||||||||||| | ||||||||||||||||||||||| || |||||||||||||| || ||||||||||||    
T  4843334 cctacggatatttgtgtacattccgcatgaaacacatttcatgcagattttgccaaggatttaggttcccaggtgaggtaatacattgggattttaggat 4843433  T
Q  459 gcgcaggaaatgtaaaattattcgcaggaa 488  Q
     |||||||||||| ||||||| ||||||||    
T  4843434 ccgcaggaaatgtgaaattatccgcaggaa 4843463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 30852310 - 30852434
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||||||||||||| || ||||||||||  ||| |||||||||||||||| |||||  ||||||| |||| |||| |||||||| ||||||||||||||    
T  30852310 gcccaggctcagctccaattttctttgtagtaagctcagccattactagaacttttaacttttcctgcggaattttatgtaaattccgcaggaaacacat 30852409  T
Q  396 ttccttcagattttgccaaggattt 420  Q
    ||||||||||||||||| |||||||    
T  30852410 ttccttcagattttgcctaggattt 30852434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 365 - 468
Target Start/End: Original strand, 3012346 - 3012449
Alignment:
Q  365 gatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcag 464  Q
    |||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||| |||||    
T  3012346 gatttttgtgtacattccgcaggaaacacacttcctgcagattttgccaaggatataggttcccaggtgaggtaataccataggattttaggatccgcag 3012445  T
Q  465 gaaa 468  Q
    ||||    
T  3012446 gaaa 3012449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 352 - 468
Target Start/End: Complemental strand, 38129085 - 38128969
Alignment:
Q  352 agtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggatt 451  Q
    |||||| ||| ||||||||||||||||||  | |||||||||||||||| || |||||||||||||||||||| || |||||||| |||| | |||||||    
T  38129085 agttttacctgcggatttttgtgtaaattctgaaggaaacacatttcctgcatattttgccaaggatttaggttcccaggtgaggcaatatcataggatt 38128986  T
Q  452 ttaggatgcgcaggaaa 468  Q
    ||||||| |||||||||    
T  38128985 ttaggatccgcaggaaa 38128969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 296 - 450
Target Start/End: Complemental strand, 41759768 - 41759602
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctac------------ggatttttgtgtaaatttcg 383  Q
    ||||||||||||||| ||||||||||||| ||||  ||||||||||||||| |||||| ||||| | |            ||||||| ||||||||| ||    
T  41759768 gcccaggctcagctccaactttctttgtagcaagcccagccattactagaacttttagcttttcttgcagatttacttgtggattttggtgtaaattccg 41759669  T
Q  384 caggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggat 450  Q
    ||||||||||||||||| ||||||||||||||||||||||| || || |||||||| ||| ||||||    
T  41759668 caggaaacacatttcctgcagattttgccaaggatttaggttccgagttgaggtaacaccataggat 41759602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 267 - 420
Target Start/End: Complemental strand, 5991602 - 5991432
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||| ||| || |||||||||| ||||  ||||||||||||||| |||||||||||    
T  5991602 caggggcggagccaccccccagctagcctgggcactagcccaggctcaactccaattttctttgtagcaagcccagccattactagaacttttagttttt 5991503  T
Q  359 cctacggatt---------tttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    ||| ||||||         ||| |||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  5991502 cctgcggatttacctgcggtttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 5991432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 38991255 - 38991181
Alignment:
Q  349 tttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttagg 423  Q
    ||||| ||||||| ||||||||||| |||||| ||  ||||||||||||||| ||||||||||||||||||||||    
T  38991255 tttagcttttcctgcggatttttgtataaattccgttggaaacacatttcctgcagattttgccaaggatttagg 38991181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 26723096 - 26722958
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacgg------------atttttgtgtaaatttcgca 385  Q
    |||||||| |||| |||||| |||||| ||| | || |||||||||||| |||||| |||||||||||            |||||| |||||||| ||||    
T  26723096 ccaggctcggctccaactttttttgtagcaaatccaaccattactagaaattttagcttttcctacggatttacctgcggatttttatgtaaattccgca 26722997  T
Q  386 ggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  26722996 ggaaacacatttcctgcagattttgtcaaggatttaggt 26722958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 23704549 - 23704489
Alignment:
Q  364 ggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||    
T  23704549 ggatttttgtgtaaattccgccgaaaacacatttcctgcagattttgccaaggatttaggt 23704489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 35300625 - 35300448
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||| ||||  |  ||||||||||||  ||||| ||||    
T  35300625 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatgtttagctttt 35300526  T
Q  359 cctacggattt------------ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||||            ||||||||||| |||||||||   ||||||| |||||||||||||||||||||||    
T  35300525 cctgcggatttacctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggt 35300448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 549
Target Start/End: Complemental strand, 22206665 - 22206575
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttt-ttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||| |||||||||||||||||||  ||| |||||||||||||||| ||||| |  ||||||| ||||||| |||||| ||||    
T  22206665 cgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatttcttgctccgccact 22206575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 22228074 - 22228164
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttt-ttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||| |||||||||||||||||||  ||| |||||||||||||||| ||||| |  ||||||| ||||||| |||||| ||||    
T  22228074 cgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaatttcttgctccgccact 22228164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 5991399 - 5991344
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    |||| |||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  5991399 cgcaagaaatgtaaaattattcgcaggaaggaagtaacattttgcgataatttttt 5991344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 3012458 - 3012548
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||| ||||||||| |||||||||  |||  |||||| |||| ||||||||| | |||||||| |||||||||||||| ||||    
T  3012458 cgcaggaaatgtgaaattattcacaggaaggaagtaacgttttgcaataatttttttgcccagactctataaaatttctggctccgccact 3012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 5850707 - 5850761
Alignment:
Q  315 tttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||| |||||||    
T  5850707 tttctttgtaacaagtccagccattactagaagttttaacttttcctgcggattt 5850761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 30852446 - 30852536
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataattttttgcctaa-actctatataatttctggctccgtcact 549  Q
    |||||||||||| |||||||||||||||||||   || |||||||||||||||||| ||  | | |||| | |||||||||||||||||||    
T  30852446 cgcaggaaatgtgaaattattcgcaggaaggaagcaacattttgcgataatttttttccccagattctaaaaaatttctggctccgtcact 30852536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 544
Target Start/End: Complemental strand, 7873199 - 7873114
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctccg 544  Q
    |||||||||||| |||||||| || |||||||  ||| |||||||||||||| ||||||| | |||||||| |||||| |||||||    
T  7873199 cgcaggaaatgtgaaattattagcgggaaggaagtaacattttgcgataatttttttgcccagactctataaaatttcaggctccg 7873114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 7873285 - 7873232
Alignment:
Q  367 tttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  7873285 tttttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 7873232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 468
Target Start/End: Complemental strand, 41862398 - 41862334
Alignment:
Q  404 gattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    ||||||||||||||||||||| |  || ||||||| ||||||||||||||||||| | |||||||    
T  41862398 gattttgccaaggatttaggttctcagatgaggtattaccttaggattttaggatccacaggaaa 41862334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 420
Target Start/End: Complemental strand, 25688338 - 25688202
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatt------------tttgtgtaaatttcg 383  Q
    |||||| |||||||| || |||||||||| |||| ||||||||||||| || |||||| ||||||| | ||||            ||| |||||||| ||    
T  25688338 gcccagactcagctccaattttctttgtagcaagctcagccattactaaaacttttagcttttcctgcagatttacctgcaaatgtttatgtaaattccg 25688239  T
Q  384 caggaaacacatttccttcagattttgccaaggattt 420  Q
    ||||||||| ||||||| ||||||||||| |||||||    
T  25688238 caggaaacatatttcctgcagattttgcctaggattt 25688202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 549
Target Start/End: Complemental strand, 28693979 - 28693892
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| ||||||||||||| |||||  |||  ||||||||||||| ||||||| |  ||||||| |||| ||||||||||||||    
T  28693979 aggaaatgtgaaattattcgcagaaaggaagtaaagttttgcgataatttttttgcccaggctctataaaattcctggctccgtcact 28693892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 549
Target Start/End: Complemental strand, 814952 - 814862
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt-gcctaaactctatataatttctggctccgtcact 549  Q
    ||||| |||||| |||||||| ||||||| ||  |||  ||||||||||||||||| ||| | ||||||||||||| ||||||||| ||||    
T  814952 cgcagaaaatgtgaaattattagcaggaatgaagtaacgttttgcgataatttttttgcccagactctatataattcctggctccgccact 814862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 550
Target Start/End: Complemental strand, 21932720 - 21932630
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    ||||||||| | |||||||||||||||| ||  ||| |||||||||| ||||||||||| | |||||||| |||| ||| ||||| |||||    
T  21932720 gcaggaaatatgaaattattcgcaggaaagaagtaacattttgcgataaattttttgcccagactctataaaattcctgactccgccacta 21932630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 22206834 - 22206761
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    ||||||||||||||| || |||||||||| ||||  ||| |||||||| || |||||| ||||||| |||||||    
T  22206834 gcccaggctcagctccaattttctttgtagcaagcccaggcattactataatttttagcttttcctgcggattt 22206761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 22227905 - 22227978
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    ||||||||||||||| || |||||||||| ||||  ||| |||||||| || |||||| ||||||| |||||||    
T  22227905 gcccaggctcagctccaattttctttgtagcaagcccaggcattactataatttttagcttttcctgcggattt 22227978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 534
Target Start/End: Complemental strand, 26722933 - 26722863
Alignment:
Q  465 gaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatt 534  Q
    ||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| || ||||||| ||||    
T  26722933 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaagctctataaaatt 26722863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 544
Target Start/End: Complemental strand, 25688190 - 25688105
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataattttttg-cctaaactctatataatttctggctccg 544  Q
    |||||||||||| ||||||||| ||| |||||  ||| ||||| ||||||||||||  || |  ||||||| ||||||||||||||    
T  25688190 cgcaggaaatgtgaaattattcacagaaaggaagtaacattttacgataatttttttacccaggctctataaaatttctggctccg 25688105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 22206745 - 22206709
Alignment:
Q  373 tgtaaatttcgcaggaaacacatttccttcagatttt 409  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  22206745 tgtaaattccgcaggaaacacatttcctgcagatttt 22206709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 22227994 - 22228030
Alignment:
Q  373 tgtaaatttcgcaggaaacacatttccttcagatttt 409  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  22227994 tgtaaattccgcaggaaacacatttcctgcagatttt 22228030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 304 - 549
Target Start/End: Original strand, 339311 - 339565
Alignment:
Q  304 tcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttca 403  Q
    ||||||||||||||||||||| |||  ||||||||||||| || |||||| |||||||  ||||||||||||||||| || |||||| ||||||||| ||    
T  339311 tcagctctaactttctttgtagcaaactcagccattactaaaacttttagcttttcctgtggatttttgtgtaaattccgtaggaaatacatttcctgca 339410  T
Q  404 gattttgccaaggatttaggtccctaggtgag--------gtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaaggacata 495  Q
    |||||| |||||||||||||| || |||||||        |||||||| |||  |||||| || |||||||||||| |||||| | ||||||||||  ||    
T  339411 gattttaccaaggatttaggttcccaggtgaggtaatagtgtaataccatagacttttagaatccgcaggaaatgtgaaattaattgcaggaaggaagta 339510  T
Q  496 atattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    | |||||||||| ||||||||||| || ||||||| ||||||| |||||| ||||    
T  339511 acattttgcgataaattttttgcccaagctctataaaatttctagctccgccact 339565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 10397977 - 10397812
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||| |||   || ||||||| |||| |||||| ||||    
T  10397977 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaaacccaaccattacgagaatttttagctttt 10397878  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| |||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  10397877 cctgcggattgttgtgtaaattccgcaggaaacacatttcctgcatattttgccaaggatttaggt 10397812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 295 - 421
Target Start/End: Complemental strand, 23663908 - 23663782
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||||||| |||| ||||||||||||| ||||  || ||||| ||| || |||||| ||||||| |||||||||||||||||| |||||||||||||    
T  23663908 tgcccaggctcggctccaactttctttgtagcaagcccaaccattgctataatttttagcttttcctgcggatttttgtgtaaattccgcaggaaacaca 23663809  T
Q  395 tttccttcagattttgccaaggattta 421  Q
    |||||| ||||||||||||||||||||    
T  23663808 tttcctgcagattttgccaaggattta 23663782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 295 - 424
Target Start/End: Complemental strand, 34249162 - 34249033
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    ||||||| |||| ||| ||||||||||||| ||||  || |||||||||||| |||||| ||||||| ||||||||||||||||||  ||||||||||||    
T  34249162 tgcccagactcaactccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggatttttgtgtaaattctgcaggaaacaca 34249063  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| ||||||||||||||| |||||||    
T  34249062 tttcctgcagattttgccaagggtttaggt 34249033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 1781207 - 1781042
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    ||||||||||||||||||||||||||||||        |||||| || |||| ||||||||||||| |||   || ||||||||| || |||||| ||||    
T  1781207 caggggcggagccaccccccagctagtctgggctagtgcccaggttcggctccaactttctttgtagcaaacccaaccattactataaattttagctttt 1781108  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||  ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  1781107 cctgtggatttttgtgtaaattcctcaggaaacacatttcctgcagattttgccaaggatttaggt 1781042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 363 - 468
Target Start/End: Complemental strand, 2836281 - 2836176
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgc 462  Q
    |||||||| ||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| |||    
T  2836281 cggattttcgtgtaaattccgcaggaaatacatttcctgcagattttgtcaaggatttaggttcccaggtgaggtaataccataggattttaggatccgc 2836182  T
Q  463 aggaaa 468  Q
    ||||||    
T  2836181 aggaaa 2836176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 2960652 - 2960776
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||||||||||||| || |||||||||| ||||| |||||| |||||||| |||||| ||||||| |||||| || |||||||||||||| ||||||||    
T  2960652 gcccaggctcagctccaattttctttgtagcaagtccagccaatactagaacttttagcttttcctgcggattattatgtaaatttcgcagaaaacacat 2960751  T
Q  396 ttccttcagattttgccaaggattt 420  Q
    ||||| |  |||||||| |||||||    
T  2960752 ttcctgctaattttgcccaggattt 2960776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 2941257 - 2941318
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2941257 cggattttagtgtaaatttcgcaggaaacacatttcctgcagattttgccaaggatttaggt 2941318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 299 - 420
Target Start/End: Complemental strand, 14939055 - 14938934
Alignment:
Q  299 caggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttc 398  Q
    |||||||||||| || |||||||||| |||    |||||||||||||| |||||||||||  | | ||||||| |||||||| |||||||||||||||||    
T  14939055 caggctcagctccaattttctttgtagcaaacctagccattactagaacttttagttttttatgctgatttttatgtaaattccgcaggaaacacatttc 14938956  T
Q  399 cttcagattttgccaaggattt 420  Q
    || ||||||||||  |||||||    
T  14938955 ctgcagattttgcttaggattt 14938934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 9696092 - 9696151
Alignment:
Q  365 gatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  9696092 gatttttgtgtaaattccgcaggaaacatatttcctgcagattttgccaaggatttaggt 9696151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 461 - 550
Target Start/End: Original strand, 9696193 - 9696283
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcacta 550  Q
    ||||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| | |||||||| ||||||||||||| ||||||    
T  9696193 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaatttctggctccatcacta 9696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 488
Target Start/End: Original strand, 34188856 - 34188942
Alignment:
Q  402 cagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaa 488  Q
    |||||||| |||| ||||||| | |  |||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  34188856 cagattttaccaatgatttagattctcaggtgaagtaataccttaggattttaggatccgcaggaaatgtgaaattatccgcaggaa 34188942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 9046994 - 9046935
Alignment:
Q  365 gatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  9046994 gatttttgtgtagattccgcaggaaacacatttcctgcagattttgtcaaggatttaggt 9046935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 549
Target Start/End: Complemental strand, 14938900 - 14938811
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| ||||||||| ||||||| |  ||| |||||||||||||| ||||||| || ||||||| |||||||| ||||||||||    
T  14938900 gcaggaaatgtgaaattattcccaggaagaaagtaacattttgcgataatttttttgcccaagctctataaaatttctgactccgtcact 14938811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 461 - 544
Target Start/End: Complemental strand, 9046893 - 9046809
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||||| |||||||||  |||||||| ||||  |||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  9046893 gcaggaaatgtgaaattattcaaaggaaggaaataacgttttccgataaattttttgcccaaactctataaaatttctggctccg 9046809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 15122078 - 15122136
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattta 421  Q
    ||||||| ||| ||||||  |||||||||||||||||| ||||||||||||||||||||    
T  15122078 cggatttgtgtctaaattctgcaggaaacacatttcctgcagattttgccaaggattta 15122136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 15528981 - 15529042
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||| |||||||||||| |||||||||   ||||||| |||||||||||||||||||||||    
T  15528981 cggatgtttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggt 15529042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 550
Target Start/End: Original strand, 2960809 - 2960900
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataattttttgcctaaa-ctctatataatttctggctccgtcacta 550  Q
    |||||||||||| |||||||||||| ||||||  ||| ||||||| ||||||||||  || |  ||||||| |||||||||||||| |||||    
T  2960809 cgcaggaaatgtgaaattattcgcaagaaggaagtaacattttgcaataattttttcgctcaggctctataaaatttctggctccgccacta 2960900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 549
Target Start/End: Complemental strand, 10397784 - 10397698
Alignment:
Q  464 ggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| | |||||||| |||| |||| |||| ||||    
T  10397784 ggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggttccgccact 10397698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 28614382 - 28614328
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    |||| |||||| |||||||||||||||||||  ||| ||||||||||||||||||    
T  28614382 gcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttt 28614328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 28614531 - 28614458
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    ||||||||||||||| || | |||||||| ||||   |||||||||||||| |||||  |||||||||||||||    
T  28614531 gcccaggctcagctccaattatctttgtagcaagcctagccattactagaacttttaacttttcctacggattt 28614458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 34188762 - 34188831
Alignment:
Q  300 aggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||| ||| |  ||||||| |||||||    
T  34188762 aggctcagctccaactttctttgtagcaagcccagccattactagaactttcaacttttcctgcggattt 34188831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 542
Target Start/End: Complemental strand, 1781019 - 1780939
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctc 542  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| |||||| |||| | |||||||| |||| |||||||    
T  1781019 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttatgcccagactctataaaattcctggctc 1780939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 544
Target Start/End: Original strand, 15529084 - 15529168
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccg 544  Q
    ||||||||||| |||||||||| ||||| ||  |||| ||||||||| |||||||||||||  ||||||| |||| ||| |||||    
T  15529084 gcaggaaatgtgaaattattcgtaggaaagaagtaatgttttgcgataaattttttgcctaggctctataaaattcctgactccg 15529168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 2941360 - 2941443
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctcc 543  Q
    ||||||||||| |||||||||| ||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| ||||||||    
T  2941360 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctcc 2941443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 15122181 - 15122270
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||| |||||| ||||||||||||| ||| |  |||  ||||||||||| ||||||||| |||||||||| |||| ||| ||||| ||||    
T  15122181 gcagaaaatgtgaaattattcgcagaaagaaagtaacgttttgcgataaattttttgcccaaactctataaaattcctgactccgccact 15122270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 468
Target Start/End: Complemental strand, 31188354 - 31188321
Alignment:
Q  435 ggtaataccttaggattttaggatgcgcaggaaa 468  Q
    |||||||||||||||||||||||| |||||||||    
T  31188354 ggtaataccttaggattttaggatccgcaggaaa 31188321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 549
Target Start/End: Complemental strand, 31188285 - 31188201
Alignment:
Q  466 aaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||| ||||||||| |||||||||  |||  ||||||||||||| ||||||| |  ||||||| ||||  |||||||||||||    
T  31188285 aaatgtgaaattattcacaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaattcatggctccgtcact 31188201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 48)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 296 - 468
Target Start/End: Original strand, 15503883 - 15504055
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    ||||||||||| ||  || |||||||||| ||||   | |||||||||||| |||||| ||||||| ||||||||||||||||||  |||||||||||||    
T  15503883 gcccaggctcaccttcaaatttctttgtagcaagcctaaccattactagaatttttagcttttcctgcggatttttgtgtaaattctgcaggaaacacat 15503982  T
Q  396 ttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    ||||| ||||||||||||||||||||||| || || |||||||||||| |||||||||||||| ||| |||||    
T  15503983 ttcctgcagattttgccaaggatttaggttcccagatgaggtaataccataggattttaggatccgcgggaaa 15504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 296 - 468
Target Start/End: Complemental strand, 16667642 - 16667458
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt------------ttgtgtaaatttcg 383  Q
    |||||| |||||||| ||||||||||||| ||||| ||||||||||||||| |||||| ||||||| |||||||            ||||||||||| ||    
T  16667642 gcccagactcagctccaactttctttgtagcaagtccagccattactagaacttttagcttttcctgcggatttacctgcggatttttgtgtaaattccg 16667543  T
Q  384 caggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    ||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||| |||||||||||||| |||| ||||    
T  16667542 caggaaacacatttcctgcagattttgccaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaagaaa 16667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 266 - 424
Target Start/End: Original strand, 30248894 - 30249060
Alignment:
Q  266 tcaggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttt 357  Q
    ||||||||||||||||||||||||||| |||        ||||||||| |||| ||||||||||||| ||||  || | |||||||||| |||||| |||    
T  30248894 tcaggggcggagccaccccccagctagcctgggctagtgcccaggctcggctccaactttctttgtagcaagcccaactattactagaatttttagcttt 30248993  T
Q  358 tcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    | || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  30248994 ttctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggt 30249060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 361 - 485
Target Start/End: Original strand, 767314 - 767438
Alignment:
Q  361 tacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgc 460  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||      
T  767314 tacggatttttgtataaattccgcaggaaacacatttcctacaggttttgccaaggatttagattcccaggtgaggtaataccttaggattttaggatct 767413  T
Q  461 gcaggaaatgtaaaattattcgcag 485  Q
    ||||||||||| ||||||| |||||    
T  767414 gcaggaaatgtgaaattatccgcag 767438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 267 - 468
Target Start/End: Complemental strand, 17192842 - 17192634
Alignment:
Q  267 caggggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacgga 366  Q
    |||||||||||||||||| |||||     ||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||| | ||||| ||||    
T  17192842 caggggcggagccacccctcagct-----gcccaggctcagctccaactttctttgtagcaagctcagccattactagaacttttagctcttcctgcgga 17192748  T
Q  367 ttt------------ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggatttta 454  Q
    |||            |||||| |||| ||||||||| ||||||||| ||||||||| ||||||||||||| || || |||||||||||| | ||||||||    
T  17192747 tttaccggcggatttttgtgtcaattccgcaggaaatacatttcctgcagattttgtcaaggatttaggttcccagatgaggtaataccattggatttta 17192648  T
Q  455 ggatgcgcaggaaa 468  Q
    |||| |||||||||    
T  17192647 ggatccgcaggaaa 17192634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 296 - 479
Target Start/End: Complemental strand, 36234719 - 36234536
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    |||||| |||||||| || |||||||||| ||||  ||||||||| ||||| |||||  ||||| | ||||||||| ||||||||  ||||||||| |||    
T  36234719 gcccagactcagctccaattttctttgtagcaagcccagccattattagaacttttaacttttcatgcggatttttatgtaaattcagcaggaaacgcat 36234620  T
Q  396 ttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgtaaaattat 479  Q
    ||||| |||||||| |||||| |||| || |||||||||||| ||||| ||  |||||||||| |||||||||||| |||||||    
T  36234619 ttcctgcagattttaccaagggtttaagttcctaggtgaggtgataccataacattttaggatccgcaggaaatgtgaaattat 36234536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 34443896 - 34444061
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| ||||||||||||| ||||  |  |||||||||||| || ||| ||||    
T  34443896 caggggcggagccaccccccagctagcctgggctagtgcccaggctcagctccaactttctttgtagcaagccctaccattactagaatttgtagctttt 34443995  T
Q  359 cctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||| ||||||||||| |||||| |||| ||||  |||||||| |||||||||||||||||||||||    
T  34443996 cctgcggatttttgtctaaattccgcaagaaatgcatttcctgcagattttgccaaggatttaggt 34444061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 366 - 468
Target Start/End: Original strand, 21069046 - 21069148
Alignment:
Q  366 atttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcagg 465  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||    
T  21069046 atttttgtgtatattccgcaagaaacacatttcctgcagattttgccaaagatttaggttcctaggtgaggttataccataggattttaggatccacagg 21069145  T
Q  466 aaa 468  Q
    |||    
T  21069146 aaa 21069148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 363 - 471
Target Start/End: Complemental strand, 12267479 - 12267371
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgc 462  Q
    ||||||||| |||||||| |||| ||||||||||||||  ||||||||||| | |||||| | | |||||||||||||||| |||||||||||||| |||    
T  12267479 cggatttttatgtaaattccgcaagaaacacatttcctgtagattttgccacgaatttagattcgtaggtgaggtaataccataggattttaggatccgc 12267380  T
Q  463 aggaaatgt 471  Q
    |||||||||    
T  12267379 aggaaatgt 12267371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 267 - 420
Target Start/End: Original strand, 16567721 - 16567894
Alignment:
Q  267 caggggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt 358  Q
    |||||||||||||||||||||||||| |||        |||||||||||||| || |||||||||| ||||| ||||||||||||||| |||||| ||||    
T  16567721 caggggcggagccaccccccagctagcctgggcactagcccaggctcagctccaattttctttgtagcaagtccagccattactagaacttttagctttt 16567820  T
Q  359 cctacggattt------------ttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    | | |||||||            || |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  16567821 cttgcggatttacctgcgaattgttatgtaaatttcgcaggaaacacatttcctacagattttgcctaggattt 16567894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 35468937 - 35468998
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  35468937 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggt 35468998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 471
Target Start/End: Complemental strand, 13942821 - 13942741
Alignment:
Q  391 cacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaatgt 471  Q
    |||||||||| ||||||||||||||||||||| |    |||||||||||||||||||||||||||||| ||||||||||||    
T  13942821 cacatttcctgcagattttgccaaggatttagattatcaggtgaggtaataccttaggattttaggatccgcaggaaatgt 13942741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 395 - 468
Target Start/End: Complemental strand, 8214701 - 8214628
Alignment:
Q  395 tttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    |||||| ||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||    
T  8214701 tttcctgcagattttgtcaaggatttaggttcttaggtgaggtaatactttaggattttaggatccgcaggaaa 8214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 461 - 549
Target Start/End: Complemental strand, 14832789 - 14832700
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||||| ||||||||||| | |||||||| |||||||||||||| ||||    
T  14832789 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccagactctataaaatttctggctccgccact 14832700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 33006941 - 33007002
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  33006941 cggatttttgtgtaaattccgtaggaaacacatttcctgcagattttgccaaggatttaggt 33007002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 34846401 - 34846462
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  34846401 cggatttttgtgtaaattccgcagtaaacacatttcctacagattttgccaaggatttaggt 34846462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 15675347 - 15675405
Alignment:
Q  363 cggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattta 421  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15675347 cggagttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggattta 15675405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 15504086 - 15504175
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||||| ||||||||| | |  |||||||||||||||||||||| ||||    
T  15504086 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgtcgaggctctatataatttctggctccgccact 15504175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 420
Target Start/End: Complemental strand, 32953850 - 32953680
Alignment:
Q  270 gggcggagccaccccccagctagtctg--------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcct 361  Q
    ||||||||||||||||||||||| |||        || ||||||||||| || |||||||||| ||||  ||||||||||||||| |||||| |||||||    
T  32953850 gggcggagccaccccccagctagcctgggcactagccgaggctcagctccaattttctttgtagcaagcccagccattactagaacttttagcttttcct 32953751  T
Q  362 acgg------------atttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
    ||||            |||||| |||||||| || |||||||||||||||| ||||||||||| |||||||    
T  32953750 acggatttacctgcaaatttttatgtaaattccgtaggaaacacatttcctgcagattttgcctaggattt 32953680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 7159721 - 7159610
Alignment:
Q  313 actttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgcc 412  Q
    |||||||||||| |||| ||||||||||||||||  | | | |||||||   |||||| ||||| ||| |||||||||||| |||||| | |||||||||    
T  7159721 actttctttgtagcaagctcagccattactagaacctctcgcttttcctgttgattttggtgtacattccgcaggaaacacgtttcctgcggattttgcc 7159622  T
Q  413 aaggatttaggt 424  Q
    ||| ||||||||    
T  7159621 aagaatttaggt 7159610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 37779633 - 37779704
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt 369  Q
    ||||||||| ||| || |||||||||| ||||||||||||||||||||| ||||||||||| || |||||||    
T  37779633 ccaggctcaactccaattttctttgtagcaagttcagccattactagaacttttagttttttctgcggattt 37779704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 43228787 - 43228655
Alignment:
Q  300 aggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggattt------------ttgtgtaaatttcgcagg 387  Q
    ||||||| ||| || |||||||||| ||||  ||||||||||||||| |||||| |||||||||||||||            || |||||||| ||||||    
T  43228787 aggctcaactccaattttctttgtagcaagcccagccattactagaacttttagcttttcctacggatttacctgcggatgtttatgtaaattccgcagg 43228688  T
Q  388 aaacacatttccttcagattttgccaaggattt 420  Q
    ||||||||||||| ||||||||||| |||||||    
T  43228687 aaacacatttcctgcagattttgcctaggattt 43228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 16567927 - 16568017
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||||| ||||||||| |||||||||  ||| |||||||||||| ||||||||| || ||||||| |||||||| ||||| ||||    
T  16567927 cgcaggaaatgtgaaattattcccaggaaggaagtaacattttgcgataatttttttgcccaagctctataaaatttctgactccgccact 16568017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 549
Target Start/End: Complemental strand, 1672465 - 1672376
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||| |||||| |||||||||||||||||||  ||| |||||||||||||| ||||||| |  ||||||| |||||||||||||| ||||    
T  1672465 gcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttctggctccgccact 1672376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 2476502 - 2476591
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||| ||||||||  |||  ||||||||| ||||||||||| |  |||||||||||||||||||||| ||||    
T  2476502 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctatataatttctggctccgccact 2476591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 420
Target Start/End: Complemental strand, 7162264 - 7162096
Alignment:
Q  267 caggggcggagccaccccccagctagtct---gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctac 363  Q
    ||||||||||||||||||||| || | |    ||||||||||||||| || |||||||||| ||||  |||||||||||| || |||||| ||||||| |    
T  7162264 caggggcggagccaccccccatctgggcactagcccaggctcagctccaattttctttgtagcaagcccagccattactaaaaattttagcttttcctgc 7162165  T
Q  364 ------------ggatttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattt 420  Q
                |||||||| |||||||| | ||||||||||||||||| ||||||||||| |||||||    
T  7162164 ggatttacctgaggatttttatgtaaattccacaggaaacacatttcctgcagattttgcctaggattt 7162096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 462 - 549
Target Start/End: Complemental strand, 7162061 - 7161973
Alignment:
Q  462 caggaaatgtaaaattattcgcaggaaggacataatattttgcgataatt-ttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||| |||||||| ||||||||||  ||| |||||||||||||| ||||||| |  ||||||| |||||||||||||| ||||    
T  7162061 caggaaatgtgaaattatttgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttctggctccgccact 7161973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 37552050 - 37552134
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctcc 543  Q
    |||||||||||| |||||||||||||||||||  ||| ||||||| |||| ||||||||| |  ||||||| |||||||||||||    
T  37552050 cgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataatttttttgcccaggctctataaaatttctggctcc 37552134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 37654880 - 37654964
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctcc 543  Q
    |||||||||||| |||||||||||||||||||  ||| ||||||| |||| ||||||||| |  ||||||| |||||||||||||    
T  37654880 cgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataatttttttgcccaggctctataaaatttctggctcc 37654964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 2476370 - 2476445
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttt 370  Q
    |||||||||||||||| || |||||||||| ||||| |  |||||||||||| |||||| ||||||| ||||||||    
T  2476370 tgcccaggctcagctccaattttctttgtagcaagtcctaccattactagaatttttagcttttcctgcggatttt 2476445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 21069158 - 21069241
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctcc 543  Q
    ||||||||||| ||||||||  ||||||||| ||||  ||||||||| ||||||||||| | |||||||| |||||||||||||    
T  21069158 gcaggaaatgtgaaattatttccaggaaggaaataacgttttgcgataaattttttgcccagactctataaaatttctggctcc 21069241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 549
Target Start/End: Original strand, 33007025 - 33007112
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| | |||||||| |||| ||||||||| ||||    
T  33007025 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggctccgccact 33007112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 400
Target Start/End: Original strand, 42989462 - 42989605
Alignment:
Q  266 tcaggggcggagccaccccccagctagtctg---------cccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttt 356  Q
    ||||||||||||||||||||||||||| |||         |||||| ||||||   ||||||||||   ||||  ||||||||||||||| || | | ||    
T  42989462 tcaggggcggagccaccccccagctagcctggggcactagcccaggatcagcttctactttctttgaggcaagcccagccattactagaacttctcgctt 42989561  T
Q  357 ttcctacggatttttgtgtaaatttcgcaggaaacacatttcct 400  Q
    || || || ||||||||||||||| |||||||||||||||||||    
T  42989562 tttctgcgaatttttgtgtaaattccgcaggaaacacatttcct 42989605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 461 - 542
Target Start/End: Original strand, 35469040 - 35469122
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctc 542  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||||| ||||||||||| |  ||||||| |||| |||||||    
T  35469040 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccaggctctataaaattcctggctc 35469122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 6900742 - 6900814
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttt 370  Q
    |||| |||| ||| ||||||||||||| |||| |||||||||||||||| |||||| ||||||| | ||||||    
T  6900742 ccagcctcaactccaactttctttgtagcaagctcagccattactagaacttttagcttttcctgcagatttt 6900814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 549
Target Start/End: Complemental strand, 13942730 - 13942642
Alignment:
Q  462 caggaaatgtaaaattattcgcaggaaggacataatattttgcgataattttttg-cctaaactctatataatttctggctccgtcact 549  Q
    |||||||||| |||||||||||||||||||  |||  |||||||||||||||||  || |  ||||||| |||||||||||||| ||||    
T  13942730 caggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttacccaggctctataaaatttctggctccgccact 13942642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 8214751 - 8214687
Alignment:
Q  306 agctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttt 370  Q
    ||||| |||||| ||||||||||||  ||||||||||||||||||||  ||||||| | ||||||    
T  8214751 agctccaactttttttgtaacaagtctagccattactagaagttttatcttttcctgcagatttt 8214687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 549
Target Start/End: Original strand, 15675451 - 15675539
Alignment:
Q  462 caggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    |||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||||| |  ||||||| |||| || |||||| ||||    
T  15675451 caggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctagctccgccact 15675539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 6900903 - 6900958
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    |||||||||||| |||||||||||| ||||||  ||| |||||||||||| |||||    
T  6900903 cgcaggaaatgtgaaattattcgcatgaaggaagtaacattttgcgataaattttt 6900958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 13695020 - 13695067
Alignment:
Q  299 caggctcagctctaactttctttgtaacaagttcagccattactagaa 346  Q
    |||||||||||  ||||||||||||| |||||||| ||||||||||||    
T  13695020 caggctcagcttcaactttctttgtagcaagttcatccattactagaa 13695067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 549
Target Start/End: Original strand, 34846485 - 34846572
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| |||||||||||||||||||  |||  ||||||||| ||||||||| | |  ||||||| |||| ||||||||| ||||    
T  34846485 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgtccaggctctataaaattcctggctccgccact 34846572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 37779779 - 37779834
Alignment:
Q  460 cgcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    |||||||||||| ||||||||||| |||||||  ||| ||||| ||||||||||||    
T  37779779 cgcaggaaatgtgaaattattcgctggaaggaagtaacattttacgataatttttt 37779834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Complemental strand, 32953646 - 32953592
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    ||||||||||| |||||||||| ||||||||  ||| |||||||||||| |||||    
T  32953646 gcaggaaatgtgaaattattcgtaggaaggaagtaacattttgcgataacttttt 32953592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 515
Target Start/End: Original strand, 34444103 - 34444157
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgataatttttt 515  Q
    ||||||||||| |||||||||| ||||||||  |||  |||||||||||||||||    
T  34444103 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataatttttt 34444157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 34846321 - 34846379
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttag 353  Q
    ||||||||||| |||| ||||||||||||| |||||  | |||||||||||| ||||||    
T  34846321 tgcccaggctcggctccaactttctttgtagcaagtcaaaccattactagaatttttag 34846379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 37607424 - 37607497
Alignment:
Q  298 ccaggctcagctctaactttctttgtaacaagttcagccattac--tagaagttttagtttttcctacggattt 369  Q
    ||||||||| ||| || |||||||||| ||||||||||||||||   |||| ||||||||||| || |||||||    
T  37607424 ccaggctcaactccaattttctttgtagcaagttcagccattacgagagaacttttagttttttctgcggattt 37607497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 6900800 - 6900873
Alignment:
Q  395 tttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcaggaaa 468  Q
    |||||| ||||||||| ||||||||||||| || || | || |||||  ||||||||||||||| ||| |||||    
T  6900800 tttcctgcagattttgtcaaggatttaggttcccagattagataatattttaggattttaggatccgcgggaaa 6900873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 12318012 - 12317964
Alignment:
Q  376 aaatttcgcaggaaacacatttccttcagattttgccaaggatttaggt 424  Q
    ||||||||||||||||| |||||||   |||||||| ||||||||||||    
T  12318012 aaatttcgcaggaaacaaatttcctatggattttgctaaggatttaggt 12317964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 1639 - 1788
Alignment:
Q  267 caggggcggagccaccccccagctagtctgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacgga 366  Q
    ||||||||||||||||||| ||||||||||    |||||||||| |||||||||||||  |||  ||  ||||| || || |||||  ||||||| ||||    
T  1639 caggggcggagccaccccc-agctagtctg----ggctcagctccaactttctttgtagaaagcccaatcattattaaaatttttaccttttccttcgga 1733  T
Q  367 tttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggattta 421  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  1734 tttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaattta 1788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 1833 - 1922
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| ||||||||||||| |||||  |||  ||||||||| ||||||||||| | |||||||| |||| ||||||||| ||||    
T  1833 gcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggctccgccact 1922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 366 - 509
Target Start/End: Complemental strand, 109377 - 109234
Alignment:
Q  366 atttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcagg 465  Q
    ||||||||||||||| ||||| |||||||| | || |||||||||| ||| |||||||| || ||||||| ||||||| |||||||||||||| | ||||    
T  109377 atttttgtgtaaattccgcagaaaacacatgttctgcagattttgctaagaatttaggttcccaggtgagataataccataggattttaggatccacagg 109278  T
Q  466 aaatgtaaaattattcgcaggaaggacataatattttgcgataa 509  Q
    ||| || |||||||||||||||||||  |||| |||||| ||||    
T  109277 aaacgtgaaattattcgcaggaaggaagtaatgttttgcaataa 109234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 468
Target Start/End: Complemental strand, 112292 - 112193
Alignment:
Q  366 atttttgtgtaaatttcgcaggaaacacatttccttcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatgcgcagg 465  Q
    ||||||||||||||| | |||   |||||||| || |||||| ||| ||| |||||||| || || |||||||||||| |||||||||||||| ||||||    
T  112292 atttttgtgtaaattccacag---acacattttctgcagattctgctaagaatttaggttcccagatgaggtaataccataggattttaggatccgcagg 112196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 296 - 424
Target Start/End: Original strand, 6878 - 7006
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacacat 395  Q
    |||||| || ||||| ||||||||||||| ||||  |  |||||||||||| |||||| ||||||| |||||| ||||||||||| || ||||||  |||    
T  6878 gcccagacttagctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcggattattgtgtaaattccgaaggaaatgcat 6977  T
Q  396 ttccttcagattttgccaaggatttaggt 424  Q
    ||||| |||||||||||||||||||||||    
T  6978 ttcctgcagattttgccaaggatttaggt 7006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 11491 - 11619
Alignment:
Q  295 tgcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagtttttcctacggatttttgtgtaaatttcgcaggaaacaca 394  Q
    |||||||||||||||| ||||||||||||| ||||  |  |||||||||||| ||||  |||| ||| |||||| ||||||||||| ||||| |||  ||    
T  11491 tgcccaggctcagctccaactttctttgtagcaagccctaccattactagaattttttctttt-cctgcggattattgtgtaaattccgcagaaaatgca 11589  T
Q  395 tttccttcagattttgccaaggatttaggt 424  Q
    |||||| |||||||||||||||||||||||    
T  11590 tttcctgcagattttgccaaggatttaggt 11619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 11661 - 11750
Alignment:
Q  461 gcaggaaatgtaaaattattcgcaggaaggacataatattttgcgat-aattttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||||| |||||||||| ||||||||  |||  ||||||||| ||||||||||| |   |||||| |||| ||||||||| ||||    
T  11661 gcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggttctataaaattcctggctccgccact 11750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 4066 - 4202
Alignment:
Q  296 gcccaggctcagctctaactttctttgtaacaagttcagccattactagaagttttagttttt------------cctacggatttttgtgtaaatttcg 383  Q
    ||||||||||||||| || |||||||||| ||||  ||||||||||||||| |||||| ||||            ||| ||||| ||| |||||||| ||    
T  4066 gcccaggctcagctccaattttctttgtagcaagcccagccattactagaacttttagcttttcctgcgaatttacctgcggatgtttatgtaaattccg 4165  T
Q  384 caggaaacacatttccttcagattttgccaaggattt 420  Q
     |||||||||||||||| ||||||||||| |||||||    
T  4166 taggaaacacatttcctgcagattttgcccaggattt 4202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 549
Target Start/End: Original strand, 4217 - 4304
Alignment:
Q  463 aggaaatgtaaaattattcgcaggaaggacataatattttgcgataa-ttttttgcctaaactctatataatttctggctccgtcact 549  Q
    ||||||||| |||||||||||||||||||  ||| |||||||||||| ||||||||| |  ||||||| ||||| |||||||| ||||    
T  4217 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttatggctccgccact 4304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 20983 - 20934
Alignment:
Q  442 ccttaggattttaggatgcgcaggaaatgtaaaattattcgcaggaagga 491  Q
    ||||||||||||||||| ||||||||||||  |||||| |||||||||||    
T  20983 ccttaggattttaggatccgcaggaaatgtgcaattatccgcaggaagga 20934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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