View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_12 (Length: 486)
Name: NF16524_low_12
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 210 - 469
Target Start/End: Original strand, 54947103 - 54947362
Alignment:
| Q |
210 |
acaaaagtgataattttatcataaaagtgatttatagtttgtttattattgnnnnnnnnngtagaataattttagatatgcaaccattagacctgaatag |
309 |
Q |
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| T |
54947103 |
acaaaagtgataattttatcataatagtgatttatagtttgtttattattgaaaaaaaaagtagaataattttagatatgcaaccattagacctgaataa |
54947202 |
T |
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| Q |
310 |
tgattttgtttgtttgaatgaaactatataaaagtgatatttttattataaaattacttcaagcttttgacggtaatttcatttaaagnnnnnnnnnnnn |
409 |
Q |
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| T |
54947203 |
tgattttgtttgtttgaatgaaactatataaaagtgatatttttattataaaattacttcaaacttttgacggtaatttcatttaaagttttttccttat |
54947302 |
T |
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| Q |
410 |
nnnnnnnnngtctccaaaagttgtacaaataaatagaaatctttaaatgttattattatt |
469 |
Q |
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| T |
54947303 |
tattttcttgtctccaaaagttgtacaaataaatagaaatctttaaatgtgattattatt |
54947362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 54946895 - 54947049
Alignment:
| Q |
13 |
aatattccatctttttaaacatgaaaacatatagaagagaagcacgacaccaatgaaattgcaaaacattat-----------gcgtttgttagcaataa |
101 |
Q |
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| T |
54946895 |
aatattctatctttttaaacatgaaaacatatagaagagaagcacgacaccaatgaaatcacaaaacattattacagtaacgtgcgtttgttaggaataa |
54946994 |
T |
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| Q |
102 |
aaaaggacgattttgacattttataatttataaattgtataaaaaattagattct |
156 |
Q |
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| T |
54946995 |
aaaaagacgattttgacattttataatttataaattgtataaaaaattagattct |
54947049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 46255237 - 46255289
Alignment:
| Q |
312 |
attttgtttgtttgaatgaaactatataaaagtgatatttttattataaaatt |
364 |
Q |
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| T |
46255237 |
atttagtttgtttgaatacaactatataaaagtgatctttttgttacaaaatt |
46255289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 11750067 - 11750115
Alignment:
| Q |
331 |
aactatataaaagtgatatttttattataaaattacttcaagcttttgac |
380 |
Q |
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| T |
11750067 |
aactatataaaa-tgatttttttattacaaaattacttcaatcttttgac |
11750115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 27155097 - 27155060
Alignment:
| Q |
343 |
gtgatatttttattataaaattacttcaagcttttgac |
380 |
Q |
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| T |
27155097 |
gtgatttttttattataaaattacttcaatcttttgac |
27155060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 26271940 - 26272005
Alignment:
| Q |
312 |
attttgtttgtttgaatgaaactatataaaagtgatatttttattataaaattacttcaagctttt |
377 |
Q |
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| T |
26271940 |
atttagtttgtttcaatacaactatataaaagagatttttttattacaaaattagttcaatctttt |
26272005 |
T |
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