View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_14 (Length: 478)
Name: NF16524_low_14
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 123 - 462
Target Start/End: Original strand, 29821745 - 29822070
Alignment:
| Q |
123 |
tgttgagattgatgaatatggaagagataaaccatgattgatgaagattctaatgctaaggttgttgctgtgaattgtgatacgcctgggccactgttag |
222 |
Q |
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| T |
29821745 |
tgttgagattgatgaatatggaagagataaaccatgattggtgaagattctaatgctaaggttgttgttgtgaattgtgatccgcctgggccactgttag |
29821844 |
T |
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| Q |
223 |
ttggacagaaacgggttatcaaagctcctg-acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttcta |
321 |
Q |
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| T |
29821845 |
ttggacagaaacgggttatcaaagctcctgcacatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttcta |
29821944 |
T |
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| Q |
322 |
taattatgcagtttagaattatgtagtttagtaactgctattttctaggaagttagttatcatgtaatatgtatttgaatgattgtacgtttatcgaatc |
421 |
Q |
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| T |
29821945 |
taattatgc---------------agtttagtaactaccattttctaggaagttagtttccatgtaatatgtatttgaatgattgtacttttatggaatc |
29822029 |
T |
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| Q |
422 |
atgaagaaaatattcagaaaaacttccggccttcctttctt |
462 |
Q |
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| T |
29822030 |
atgaagaaaatattcagaaaaacttccagccttcctttctt |
29822070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 29821641 - 29821696
Alignment:
| Q |
19 |
attccctcacatattttctctttaacattcaacatgcatcattatcttactatttc |
74 |
Q |
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| T |
29821641 |
attccctcacatattttctctttaacattcaacatgcatcattatcttactatttc |
29821696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 33150350 - 33150320
Alignment:
| Q |
122 |
ttgttgagattgatgaatatggaagagataa |
152 |
Q |
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| T |
33150350 |
ttgttgagattgatgaatatggaagagataa |
33150320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 33150152 - 33150079
Alignment:
| Q |
121 |
attgttgagattgatgaatatggaagagataaacca-tgattgatgaagattctaatgctaaggttgttgctgt |
193 |
Q |
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| T |
33150152 |
attgtttagattgatgaatatgaaagagataaaaaagtgattgatgaagattttgatgttgaggtttttgctgt |
33150079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 121 - 285
Target Start/End: Original strand, 4030587 - 4030751
Alignment:
| Q |
121 |
attgttgagattgatgaatatggaagagataaaccatgattgatgaagattctaatgctaaggttgttgctgtgaattgtgatacgcctgggccactgtt |
220 |
Q |
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| T |
4030587 |
attgttgagattgatgaatatggaagagataaaccatgattgatgaagattctaatgctaaggttgttgctgtgaattgtgatacgcctgggccactgtt |
4030686 |
T |
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| Q |
221 |
agttggacagaaacgggttatcaaagctcctgacatcatcaaaattatatatgttaaatagttta |
285 |
Q |
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| T |
4030687 |
agttggacagaaacgggttatcaaagctcctgacatcatcaaaattatacatgttaaatagttta |
4030751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 4030485 - 4030539
Alignment:
| Q |
19 |
attccctcacatattttctctttaacattcaacatgcatcattatcttactattt |
73 |
Q |
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| T |
4030485 |
attccctcacatattttctctttaacattcaacatgcatcattatcttactattt |
4030539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 28928805 - 28928837
Alignment:
| Q |
121 |
attgttgagattgatgaatatggaagagataaa |
153 |
Q |
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| T |
28928805 |
attgttgagattgatgaatatggaagagataaa |
28928837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 40880364 - 40880283
Alignment:
| Q |
383 |
atgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttcttct |
464 |
Q |
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| T |
40880364 |
atgtaatgtgtatttgaatgattgtacgtttgttgaatcattaagaaaatattcataaaaacttacagccttcctttcttct |
40880283 |
T |
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