View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_16 (Length: 458)
Name: NF16524_low_16
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 132 - 452
Target Start/End: Complemental strand, 33377503 - 33377183
Alignment:
| Q |
132 |
tttcttctcatcccaccatccttcccctatcaacatagttttggcattgaagctttggctattattcctattccaatagtaaacaaaactattcgaaaat |
231 |
Q |
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| T |
33377503 |
tttcttctcatcccaccatccttcccctatcaacatagttttggcattgaagctttggctattattcctattccaatagtaaacaaaactattcgaaaat |
33377404 |
T |
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| Q |
232 |
tcccccaaaaccctaatcctattcttcttttttgaagaacactcaattcctttcaaagacatatgtgatggcaattgatcggaacttccactaattatag |
331 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33377403 |
tcccccaaaaccctaatcctatccttcttttttgaagaacactcaattcctttcaaagacatatgtgatggcaattgattggaacttccactaattatag |
33377304 |
T |
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| Q |
332 |
gagtgcaattctttgaagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgagagaggatatttacaaaaactgaatgaatcaaa |
431 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33377303 |
gagtgcaattctttgtagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgaaagaggatatttacaaaaactgaatgaatcaaa |
33377204 |
T |
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| Q |
432 |
gtttaatgataaaccctcctc |
452 |
Q |
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||||||||||||||||||||| |
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| T |
33377203 |
gtttaatgataaaccctcctc |
33377183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 33378475 - 33378351
Alignment:
| Q |
17 |
gaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataacttccata |
116 |
Q |
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| T |
33378475 |
gaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataacttccata |
33378376 |
T |
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| Q |
117 |
tccattctccaaacatttcttctca |
141 |
Q |
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| T |
33378375 |
tccgttctccaaacatttcttctca |
33378351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 33384616 - 33384502
Alignment:
| Q |
17 |
gaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataacttccata |
116 |
Q |
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||||||||||||||||| || | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
33384616 |
gaagggaagcacattagtgtgtttcttgacatggtatagttgcaatccgacgaaaacacatgctagagttgtagatatcagaaccatgataatctccata |
33384517 |
T |
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| Q |
117 |
tccattctccaaaca |
131 |
Q |
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| T |
33384516 |
tccattctccaaaca |
33384502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 33383468 - 33383369
Alignment:
| Q |
320 |
cactaattataggagtgcaattctttgaagaattgcactcatgagtgtactctagttggagtctacgaatagcactcgagagaggatatttacaaaaact |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| | |||||| || ||||| ||| || ||||||||| |
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| T |
33383468 |
cactaattataggagtgcaattctttgaagaattgcactcgtgagtgtactctaatcggagtcttctaatagctcttgagagtggaaatgaacaaaaact |
33383369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 33383635 - 33383585
Alignment:
| Q |
132 |
tttcttctcatcccaccatccttcccctatcaacatagttttggcattgaa |
182 |
Q |
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|||||||||||||||||| |||||||||| |||| ||||||| | |||||| |
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| T |
33383635 |
tttcttctcatcccaccaaccttcccctaccaacgtagttttcggattgaa |
33383585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 26790697 - 26790811
Alignment:
| Q |
17 |
gaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataacttccata |
116 |
Q |
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|||||||||||||||||||| | |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
26790697 |
gaagggaagcacattagggtgtttcttgacatggtatagttgcaggccgacgaaaacacatgctagagttgtagatatcagaaccatgataatctccata |
26790796 |
T |
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| Q |
117 |
tccattctccaaaca |
131 |
Q |
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||| ||||||||||| |
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| T |
26790797 |
tccgttctccaaaca |
26790811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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