View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_17 (Length: 421)
Name: NF16524_low_17
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 31398722 - 31398331
Alignment:
| Q |
20 |
ccttctttgctgtattattagggcttggagcacctatttcttgaggaggtacaatcactccattttctggattattttctaacaaaaccaatggatcttg |
119 |
Q |
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| T |
31398722 |
ccttctttgctgtattattagggcttggagcacctacttcttgaggaggtacaatcactccattttctggattattttctaacaaaaccaatggatcttg |
31398623 |
T |
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| Q |
120 |
aaccggtacaccatcgtcggtaactacaggtgcagtgataaatctaccacttcctacaagaggaaacagttggcgacattcttccttccactcagcatat |
219 |
Q |
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| T |
31398622 |
aaccggtacaccatcgtcggtaactacaggtgcagtgataaatctaccacttcctacaagaggaaacagttggcgacattcttccttccattcagcatat |
31398523 |
T |
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| Q |
220 |
tgcgtcctgaaaatatagaaagaagttatacaacaaactaatcaacgatcgattagatttataatgtaaaacacaacaatcttaaggtgcagagtagaat |
319 |
Q |
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| T |
31398522 |
tgcgtcctgaaaatatagaaagaagttatacaacaaactaatcaacgattgattagatttataatgtaaaacacaacaatcttaaggtgcagagtagaat |
31398423 |
T |
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| Q |
320 |
gtgacagtaattaggagcttatgaaaggaaaaatgattaccttcggcgctgccttatctcttctctttcctcgaatgtactcgtgggttcat |
411 |
Q |
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| T |
31398422 |
gtgacagtaattaggagcttatagaaggaaaaatgattaccttcggcgctgccttatctcttctctttcctcgaatgtactcgtgggttcat |
31398331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 34941918 - 34941966
Alignment:
| Q |
154 |
gtgataaatctaccacttcctacaagaggaaacagttggcgacattctt |
202 |
Q |
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| T |
34941918 |
gtgataaatcgaccacttccaacaagaggaaacaattggcgacattctt |
34941966 |
T |
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