View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16524_low_20 (Length: 399)
Name: NF16524_low_20
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 1092366 - 1092761
Alignment:
| Q |
1 |
taagtaaacaaattcaaattaaagcgaggacactagagaacaaaactatcatggagaatatgaacgatgcccaaatagtataaatcaagttatatatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092366 |
taagtaaacaaattcaaattaaagcgaggaaaatagagaacaaaactatcatggagcatatgaacgatgcccaaatagtataaatcaagttatatatttc |
1092465 |
T |
|
| Q |
101 |
caacagaaatannnnnnnn-atcaatatagcaaataaaacagagaataaacagctacaagtcttatcttctttgtagtgcataatacacaaagcaatact |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092466 |
caacagaaatatatttttttatcaatatagcaaataaaacagagaataaacagctacaagtcttatcttctttgtagtgcataatacacaaagcaatact |
1092565 |
T |
|
| Q |
200 |
taccgaagttacgtcaggatcagcagtcacaacctgcttttcagcaggcaaatacttgttctgcttgaattccatatctcctgtgatagaaagagaacta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092566 |
taccgaagttacgtcaggatcagcagtcacaacctgcttttcagcaggcaaatacttgttctgcttgaattccatatctcctgtgatagaaagagaacta |
1092665 |
T |
|
| Q |
300 |
tatcacaaacacttgcaaaatgcaaaatctcaagacatcaactataaatattttagaacaccaaactcatacatttttctttgcattaagaattat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092666 |
tatcacaaacacttgcaaaatgcaaaatctcaagacatcaactataaatattttagaacaccaaactcatacatttttctttgcattaagaattat |
1092761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University