View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16524_low_24 (Length: 331)
Name: NF16524_low_24
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 2628873 - 2628563
Alignment:
| Q |
2 |
ggagctagatttattcattagtgatatgtatgattacnnnnnnn-cactacgtccttgtttgttttgacgttatctactaaattctcacgtccctaggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2628873 |
ggagctagatttattcattagtgatatgtatgattacaaaaaaaacactatgtccttgtttgttttgacgttatctactaaattctcacgtccctaagtc |
2628774 |
T |
|
| Q |
101 |
atttcaacgtgaattttaagaagctataaaatccaacttctagtaaacgtgccgtgggtgggagatccaccgcaattccaaacacatactacatcggtac |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2628773 |
atttcaacgtgaattttaagaagttataaaatccaacttctagtaaacgtgccgtgggtgggagatccaccacaattccaaacacatactacatcggtac |
2628674 |
T |
|
| Q |
201 |
aaaagaataaacaagaaaaaagaaaccaaggagtgccttcataaaaagtggaagtcacattagaacttaaaggtgatgaaaatttaaattaataagtaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2628673 |
aaaagaataaacaagaaaaaagaaaccaaggagtgccttcataaaaagtggaagtcacactagaacttaaaggtgatgaaaatttaaattaataagtaaa |
2628574 |
T |
|
| Q |
301 |
aaatgatgaac |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
2628573 |
aaatgatgaac |
2628563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 37320057 - 37319955
Alignment:
| Q |
89 |
cgtccctaggtcatttcaacgtgaattttaagaagctataaaatccaacttctagtaaacgtgccgtgggtgggagatccaccgcaattccaaacacata |
188 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
37320057 |
cgtccctaggccatttcaacgtgaatttttagaagctataaaatccagcttctagtaaatgtgtggtgggagggatatccaccgcaattccaaacacata |
37319958 |
T |
|
| Q |
189 |
cta |
191 |
Q |
| |
|
||| |
|
|
| T |
37319957 |
cta |
37319955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 34726457 - 34726551
Alignment:
| Q |
57 |
tgtttgttttgacgttatctactaaattctcacgtccctaggtcatttcaacgtgaattttaagaagctataaaatccaacttctagtaaacgtg |
151 |
Q |
| |
|
||||||||||| | ||| |||||| |||||| | |||| | |||||||||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
34726457 |
tgtttgttttggcattagctactacattctcgcatccccaaaccatttcaacgtggattttaagaagctataaaatccagctcctagtaaacgtg |
34726551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 31298026 - 31298136
Alignment:
| Q |
74 |
tctactaaattctcacgtccctaggtcatttcaacgtgaattttaagaagctataaaatccaacttctagtaaacgtgccgtgggtgggagatccaccgc |
173 |
Q |
| |
|
|||| |||||||||||||||||| | | ||||||| ||||||||||||||||||||| ||| |||| ||| |||||| || ||||||| ||| ||| |
|
|
| T |
31298026 |
tctaataaattctcacgtccctatgccttttcaacttgaattttaagaagctataaattcctgcttcgagtggacgtgctatgtgtgggagttccgtcgc |
31298125 |
T |
|
| Q |
174 |
aattccaaaca |
184 |
Q |
| |
|
| ||||||||| |
|
|
| T |
31298126 |
agttccaaaca |
31298136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 25931518 - 25931440
Alignment:
| Q |
106 |
aacgtgaattttaagaagctataaaatccaacttctagtaaacgtgccgtgggtgggagatccaccgcaattccaaaca |
184 |
Q |
| |
|
|||||||| ||||||||||| ||| | |||||| ||| | |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
25931518 |
aacgtgaaatttaagaagctcaaaattgttacttcttgtagaagtgcggtgggtgggagatccaccgcaatcccaaaca |
25931440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University