View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_27 (Length: 311)
Name: NF16524_low_27
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 3321426 - 3321123
Alignment:
| Q |
1 |
ttctttaatctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaaggccggaactaatagtgtctgtcccggct |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3321426 |
ttctttaatctcttcaagaatcttagcttcaacaaaagggtgcgtcgcgaccagccataaaaaccaagtaaggccagaactaatagtgtctgtcccggct |
3321327 |
T |
|
| Q |
101 |
gcgagtaaattaattgttgtgtctttcagaaacttgtcatctattggatattttccatctctcatttcattcataagggcgtttatcacgtcaaattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3321326 |
gcgagtaaattaattgttgtgtctttcagaaacttgtcatctattggatcttttccatctttcatttcattcataagggcgtttatcacgtcaaattgtt |
3321227 |
T |
|
| Q |
201 |
gttggccttgtatttttcttttggattcgattttttcatgtaacgcttgatcaagaattttttgattcactgtatactttttctcttcaccaatttgaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3321226 |
gttggccttgtatttttcttttggattcgattttttcatataacgcttgatcaagaattttttgattctctgtatactttttctcttcaccaatttgaag |
3321127 |
T |
|
| Q |
301 |
ccat |
304 |
Q |
| |
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|||| |
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| T |
3321126 |
ccat |
3321123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 12176111 - 12176268
Alignment:
| Q |
1 |
ttctttaatctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaaggccggaactaatagtgtctgtcccggct |
100 |
Q |
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|||||| ||||||||||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||||||||| || |||||||||||| | |||||| |
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| T |
12176111 |
ttctttgatctcttcaagaatcttggcttcaacaaaagggtgtgttgccaccaaccagaaaaaccaagtaaggcccgagctaatagtgtctcttccggct |
12176210 |
T |
|
| Q |
101 |
gcgagtaaattaattgttgtgtctttcagaaacttgtcatctattggatattttccat |
158 |
Q |
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|| |||| |||||| | ||| ||| ||| ||||| || |||||||||| || ||||| |
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| T |
12176211 |
gcaagtagattaatcgatgtatctctcaaaaactcgtagtctattggattttctccat |
12176268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 12164586 - 12164730
Alignment:
| Q |
1 |
ttctttaatctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaaggccggaactaatagtgtctgtcccggct |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||| || ||||| || ||| | ||||| |
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| T |
12164586 |
ttctttgatctcttcaagaatcttagcttcaatcaaaggatgtgttgccaccaaccagaaaaaccaagtaaggcccgagctaatcgtatctcttccggca |
12164685 |
T |
|
| Q |
101 |
gcgagtaaattaattgttgtgtctttcagaaacttgtcatctatt |
145 |
Q |
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|| |||| ||| |||| ||| ||| ||| |||||||||||||||| |
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| T |
12164686 |
gcaagtagattgattgatgtatctctcaaaaacttgtcatctatt |
12164730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 36668450 - 36668744
Alignment:
| Q |
10 |
ctcttcaagaatcttagcttcaataaaagggtgcgttgcgaccaaccataaaaaccaagtaaggccggaactaatagtgtctgtcccggctgcgagtaaa |
109 |
Q |
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||||||||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||| ||| | ||||| ||||| ||| | || || || |||| | |
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| T |
36668450 |
ctcttcaagaatcttggcttcaacaaaagggtgtgttgccaccaaccagaaaaaccaagttagggcagaacttatagtatctcttccagcagcaagtaga |
36668549 |
T |
|
| Q |
110 |
ttaattgttgtgtctttcagaaacttgtcatctattggatattttccatctctcatttcattcataagggcgtttatcacgtcaaattgttgttggcctt |
209 |
Q |
| |
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||||| | || ||| ||| |||||||||||| || ||| || |||||||| | |||| | |||||| |||| || ||||| ||||| || |||| |
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| T |
36668550 |
ttaatcgccgtatctctcaaaaacttgtcatcaatgagattttgtccatctcctacttcaaacgtaagggtatttagcaagtcaagttgtttatgtcctt |
36668649 |
T |
|
| Q |
210 |
gtatttttcttttggattcgattttttcatgtaacgcttgatcaagaattttttgattcactgtatactttttctcttcaccaatttgaagccat |
304 |
Q |
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|| ||| ||||||||||| ||||| | || |||| |||||||| |||||| |||| ||| | |||||||||||||||||| |||||||||| |
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| T |
36668650 |
gtgtttctcttttggatttgatttctgaatataaccattgatcaataattttaatattctctgaaaactttttctcttcaccaacttgaagccat |
36668744 |
T |
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