View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_31 (Length: 291)
Name: NF16524_low_31
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 7343925 - 7344195
Alignment:
| Q |
1 |
atcagcatcctcttttggacaatgtaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctcc |
100 |
Q |
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| T |
7343925 |
atcagcatcctcttttggacaatgaaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctcc |
7344024 |
T |
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| Q |
101 |
atagttccaatatctttgtttaatccattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgc |
200 |
Q |
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| T |
7344025 |
atagttccaatatctttgtttaatccagtgtttccaatgaaacgtgctacagaacaatctggagagaacaagcttgacgtttcatactcttttgcaccgc |
7344124 |
T |
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| Q |
201 |
ccattattggcatttttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacg |
271 |
Q |
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| T |
7344125 |
ccattattggcattcttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacg |
7344195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 11664562 - 11664302
Alignment:
| Q |
10 |
ctcttttggacaatgtaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttcca |
109 |
Q |
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| T |
11664562 |
ctctttaggacaataaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggagggccaaattctccacaattcca |
11664463 |
T |
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| Q |
110 |
atatctttgtttaatccattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattg |
209 |
Q |
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| T |
11664462 |
atatttttgtttaatccattgttcccaatgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattg |
11664363 |
T |
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| Q |
210 |
gcatttttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacac |
270 |
Q |
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| T |
11664362 |
gcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacac |
11664302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 11656089 - 11655845
Alignment:
| Q |
26 |
aattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgtttaatc |
125 |
Q |
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| T |
11656089 |
aattatctcctgcatacaactccttgcccatcaattccacttgtacaactcatgctagggagactcaaattctccaccatcgcaatatcattgttgaatc |
11655990 |
T |
|
| Q |
126 |
cattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctccaat |
225 |
Q |
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| T |
11655989 |
cgtcattaccaacaaaacgagctaccgaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcatttttgctccaat |
11655890 |
T |
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| Q |
226 |
gttcacacgactcacatagttaggtttatatgtttggcccaacac |
270 |
Q |
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| T |
11655889 |
gttcacacgactcacatagttaggtttatatgtttggcccaacac |
11655845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 11669857 - 11669613
Alignment:
| Q |
26 |
aattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgtttaatc |
125 |
Q |
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|||||||| |||| ||||||||||||||||||| ||||||||||| ||| ||||||||| | || |||| | ||||||| ||||| |||| |
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| T |
11669857 |
aattatctcctgcaaacaactccttctccatcaacaccacttgtgcaactcatgctagggagcataagatcttccaccatcgcaatatcattgttgaatc |
11669758 |
T |
|
| Q |
126 |
cattgtttccaatgaaacgtgctacagaacaatctggggagaacaagcttgacgtttcatactcttttgcaccgcccattattggcatttttgctccaat |
225 |
Q |
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| T |
11669757 |
cgtcattaccaacaaaacgagctacggaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctccaat |
11669658 |
T |
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| Q |
226 |
gttcacacgactcacatagttaggtttatatgtttggcccaacac |
270 |
Q |
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| T |
11669657 |
gttcacacgactcacatagttagatttatatgtttggcccaacac |
11669613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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