View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16524_low_34 (Length: 266)

Name: NF16524_low_34
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16524_low_34
NF16524_low_34
[»] chr5 (12 HSPs)
chr5 (13-250)||(23729861-23730098)
chr5 (13-250)||(23732733-23732970)
chr5 (13-216)||(23780105-23780308)
chr5 (13-216)||(23867058-23867261)
chr5 (19-216)||(23768862-23769058)
chr5 (19-216)||(23818710-23818906)
chr5 (13-216)||(23645051-23645256)
chr5 (13-216)||(23813318-23813523)
chr5 (13-156)||(23674492-23674639)
chr5 (13-156)||(23860172-23860319)
chr5 (220-248)||(23644999-23645027)
chr5 (220-248)||(23813547-23813575)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 23730098 - 23729861
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  23730098 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaaacagaaacgttaaatattgcagcaaattaaagtgattatgcagaaatttaaacc 23729999  T
Q  113 aagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 212  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||| ||||||||    
T  23729998 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatacgccaatagaacaaatacgatagaattatttagtaccaa 23729899  T
Q  213 aatatctaagtattttggacagcgtgtgaaagatttga 250  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23729898 aatatcgaagtattttggacagcgtgtgaaagatttga 23729861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 23732970 - 23732733
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23732970 gaaatgaacacgttgaaataaagcactgcagaattgtgcaaacaaaacagaaacgctaaatattgcagcaaattaaagtgattatgcagaaatttaaacc 23732871  T
Q  113 aagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 212  Q
    |||||||||||||||||||| || |||||||||||| ||||||||| |||||| ||||||| ||| |||||| ||||| |||||||||||| ||||||||    
T  23732870 aagagcgcaacagtgaaaatatcaaagaatttaaaagcatgatttagagacgaaatgaatacgcctatagaacaaatacgatagaattatttagtaccaa 23732771  T
Q  213 aatatctaagtattttggacagcgtgtgaaagatttga 250  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23732770 aatatcgaagtattttggacagcgtgtgaaagatttga 23732733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 23780105 - 23780308
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 112  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||  |||||||||||||| | ||||||||||| |||||||||||||    
T  23780105 gaaatgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaacc 23780204  T
Q  113 aagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 212  Q
    |||| ||| ||||||||||| |||||| | |||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||| |||    
T  23780205 aagaacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaa 23780304  T
Q  213 aata 216  Q
    ||||    
T  23780305 aata 23780308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 23867058 - 23867261
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaacc 112  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||  |||||||||||||| | ||||||||||| |||||||||||||    
T  23867058 gaaatgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaacc 23867157  T
Q  113 aagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 212  Q
    |||| ||| ||||||||||| |||||| | |||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||| |||    
T  23867158 aagaacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaa 23867257  T
Q  213 aata 216  Q
    ||||    
T  23867258 aata 23867261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 23768862 - 23769058
Alignment:
Q  19 aacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagc 118  Q
    ||||| |||||||||| | ||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23768862 aacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaac 23768961  T
Q  119 gcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata 216  Q
    |||||||| ||||| |||||||| ||||||||| ||||   ||| || ||||| | || |||||||||| |||||||| ||||||||| |||||||||    
T  23768962 gcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaata 23769058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 23818710 - 23818906
Alignment:
Q  19 aacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagc 118  Q
    ||||| |||||||||| | ||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23818710 aacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaac 23818809  T
Q  119 gcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata 216  Q
    |||||||| ||||| |||||||| ||||||||| ||||   ||| || ||||| | || |||||||||| |||||||| ||||||||| |||||||||    
T  23818810 gcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaata 23818906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 23645256 - 23645051
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgattat---gcagaaatttaa 109  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||   ||||||||||||    
T  23645256 gaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaa 23645158  T
Q  110 accaagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtac 209  Q
    ||||||| | ||||||||||||| |||||||| ||||||| | ||||   ||| || ||| | | || ||||||||||||||||||  ||| |||| |||    
T  23645157 accaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactac 23645058  T
Q  210 caaaata 216  Q
    |||||||    
T  23645057 caaaata 23645051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 23813318 - 23813523
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtgatta---tgcagaaatttaa 109  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||   |||||||||||||    
T  23813318 gaaatgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaa 23813416  T
Q  110 accaagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatttaaagacgagatgaatatgccaatagaataaataagatagaattattcagtac 209  Q
    ||||||| | ||||||||||||| |||||||| ||||||| | ||||   ||| || ||| | | || ||||||||||||||||||  ||| |||| |||    
T  23813417 accaagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactac 23813516  T
Q  210 caaaata 216  Q
    |||||||    
T  23813517 caaaata 23813523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 23674639 - 23674492
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtg---attatgcagaaa-ttta 108  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||   |||||||||||| ||||    
T  23674639 gaaaagaatacattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaatttta 23674540  T
Q  109 aaccaagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatt 156  Q
    |||||||| ||||||||||||||| |||||||| ||||||||| ||||    
T  23674539 aaccaagaacgcaacagtgaaaatatcgaagaaattaaaaccaagatt 23674492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 23860172 - 23860319
Alignment:
Q  13 gaaatgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgctaaaaattgcagcaaattaaagtg---attatgcagaaa-ttta 108  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||   |||||||||||| ||||    
T  23860172 gaaaagaatacattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaatttta 23860271  T
Q  109 aaccaagagcgcaacagtgaaaatttcgaagaatttaaaaccatgatt 156  Q
    |||||||| ||||||||||||||| |||||||| ||||||||| ||||    
T  23860272 aaccaagaacgcaacagtgaaaatatcgaagaaattaaaaccaagatt 23860319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 23645027 - 23644999
Alignment:
Q  220 aagtattttggacagcgtgtgaaagattt 248  Q
    |||||||||||||||||||||||||||||    
T  23645027 aagtattttggacagcgtgtgaaagattt 23644999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 23813547 - 23813575
Alignment:
Q  220 aagtattttggacagcgtgtgaaagattt 248  Q
    |||||||||||||||||||||||||||||    
T  23813547 aagtattttggacagcgtgtgaaagattt 23813575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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