View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_42 (Length: 238)
Name: NF16524_low_42
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_42 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 3642202 - 3642429
Alignment:
| Q |
11 |
atcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaaggcagctgaaattagatgaacaaatgctacactagacaatggttc |
110 |
Q |
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| T |
3642202 |
atcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaaggcagctgaaattagatgaacaaatgctacactagacaatggttc |
3642301 |
T |
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| Q |
111 |
cgattttccttgttgaaacttctctggcagtcaatactttaaaatttgagacaacaaatgaatcttgagacgatcataaagttagcagcttcatttcaac |
210 |
Q |
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| T |
3642302 |
cgattttccttgttgaaacttctccggcagtcaatactttaaaatttgagacaacaaatgaatcttgagacgatcataaagttagcagcttcatttcaac |
3642401 |
T |
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| Q |
211 |
tgaaccatgaccaattgtctttgcaatc |
238 |
Q |
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| T |
3642402 |
tgaaccatgaccaattgtctttgcaatc |
3642429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 9806801 - 9806894
Alignment:
| Q |
145 |
tactttaaaatttgagacaacaaatgaatcttgagacgatcataaagttagcagcttcatttcaactgaaccatgaccaattgtctttgcaatc |
238 |
Q |
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| T |
9806801 |
tactttataatttgagacaacaaatgaatcttgagataatcataaggttaacagcttcatttcaactgaactatgaccaattgtctttgcaatc |
9806894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 10606831 - 10606741
Alignment:
| Q |
148 |
tttaaaatttgagacaacaaatgaatcttgagacgatcataaagttagcagcttcatttcaactgaaccatgaccaattgtctttgcaatc |
238 |
Q |
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| T |
10606831 |
tttataatttgagtcaccaaatgaatcttcagattatcatgagcttaatagcttcatttcaattgaactatgaccaattgtcattgcaatc |
10606741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 10606935 - 10606872
Alignment:
| Q |
12 |
tcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaaggcagctgaa |
75 |
Q |
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| T |
10606935 |
tcatcagtgccagagttaaaaggacctggatattaattggaataaactaaacaaggcagctgaa |
10606872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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