View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_45 (Length: 230)
Name: NF16524_low_45
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_45 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4141656 - 4141427
Alignment:
| Q |
1 |
aaccaatcccaatgataatattcctcatcctccttctcaaagctaagctccatatgagttaaattgaaaaactgagcagtgtcttgttgttcaggtgttt |
100 |
Q |
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| T |
4141656 |
aaccaatcccaatgataatattcctcatcctccttctcaaagctaagctccatatgagttaaattgaaaaactgagtagtgtcttgttgttcagatgttt |
4141557 |
T |
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| Q |
101 |
gtaccggcgcgacatagtcaaacaatttcaagggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaaga |
200 |
Q |
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| T |
4141556 |
gtactggtgcgacatagtcaaacaatttcaagggtgtttgtaccgcgacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaaga |
4141457 |
T |
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| Q |
201 |
cgaaatagaagaagagtcggaaatgtgggc |
230 |
Q |
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| T |
4141456 |
cgaaatagaagaagagtcggaaatgtgggc |
4141427 |
T |
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Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 3854999 - 3855195
Alignment:
| Q |
15 |
ataatattcctcatcctccttctcaaagctaagctccatatgagttaaattgaaaaactgagcagtgtcttgttgttcaggtgtttgtaccggcgcgaca |
114 |
Q |
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| T |
3854999 |
ataatattcctcatcctctttctcaaagctaagctccacatgagttaaattgaaaaactgagt------------------tgtctgtactggcgcgaca |
3855080 |
T |
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| Q |
115 |
tagtcaaacaatttcaagggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaag |
214 |
Q |
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| T |
3855081 |
tagttaaacaatttcaagggttttcgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggaaaaaaataagaaatagaagaag |
3855180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 1882232 - 1882185
Alignment:
| Q |
44 |
taagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
91 |
Q |
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| T |
1882232 |
taagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
1882185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 41542101 - 41542054
Alignment:
| Q |
44 |
taagctccatatgagttaaattgaaaaactgagcagtgtcttgttgtt |
91 |
Q |
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| T |
41542101 |
taagctccatatgagttaaattgagaaattgagtagtgtcttgatgtt |
41542054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 25126846 - 25126882
Alignment:
| Q |
31 |
tccttctcaaagctaagctccatatgagttaaattga |
67 |
Q |
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| T |
25126846 |
tcctcctcaaacctaagctccatatgagttaaattga |
25126882 |
T |
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