View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_48 (Length: 218)
Name: NF16524_low_48
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3321701 - 3321484
Alignment:
| Q |
1 |
ttcttagaaatccacctctctggtttaaactccaagcaatcttctccccaaatttcctcaactcttccaattgaatatagagaatacacaatcattgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3321701 |
ttcttagaaatccacctctctggtttaaactccaagcaatcttctccccaaatttcctcaactcttccaattgaatatagagaatacactatcattgtat |
3321602 |
T |
|
| Q |
101 |
ttgacttaatcttatgtccactaggaagtacatctggtttcaatgaagatttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3321601 |
ttgacttaatcttatgtccactaggaagtacatctggttttaatgaagatttatgctcaaaagggacaggtggataaagtcttaaggattcacataaagc |
3321502 |
T |
|
| Q |
201 |
tgcatgtagataaaccaa |
218 |
Q |
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|||||||||||||||||| |
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| T |
3321501 |
tgcatgtagataaaccaa |
3321484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36668163 - 36668376
Alignment:
| Q |
1 |
ttcttagaaatccacctctctggtttaaactccaagcaatcttctccccaaatttcctcaactcttccaattgaatatagagaatacacaatcattgtat |
100 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||| |||||||||| |
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| T |
36668163 |
ttcttagaaacccacctctctggtttaaattccaagcaatcttctccccatatttcctccacccttccaattgagtatagagaatacaatatcattgtat |
36668262 |
T |
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| Q |
101 |
ttgacttaatcttatgtccactaggaagtacatctggtttcaatgaagatttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagc |
200 |
Q |
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||||||||||| ||| ||||||||||| ||||| | |||||| |||||||||||||||||| | ||||||||||| ||||||| |||||| ||||| |
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| T |
36668263 |
ttgacttaatcacatgaccactaggaagcacatcagatttcaagttagatttatgctcaaaaggtattggtggataaagccttaaggcttcacataaagc |
36668362 |
T |
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| Q |
201 |
tgcatgtagataaa |
214 |
Q |
| |
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| T |
36668363 |
tccatgtagataaa |
36668376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 12164316 - 12164525
Alignment:
| Q |
6 |
agaaatccacctctctggtttaaactccaagcaatcttctccccaaatttcctcaactcttccaattgaatatagagaatacacaatcattgtatttgac |
105 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||| |||||||| || ||||| | || |||||||||||||| ||||||||||||||| |
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| T |
12164316 |
agaaatccacctctctggcttaaattccaagcaatcttctccccatatttcctcgacccttccgacggagtatagagaatacactatcattgtatttgac |
12164415 |
T |
|
| Q |
106 |
ttaatcttatgtccactaggaagtacatctggtttcaatgaagatttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagctgcat |
205 |
Q |
| |
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| || | |||||||||||||||| ||||| | |||| || |||||||||||||||||| | || |||||||| || |||| |||||| |||||| ||| |
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| T |
12164416 |
tcaaccctatgtccactaggaagcacatcagatttctgtgcagatttatgctcaaaaggtatcggcggataaagcctcaaggcttcacataaagctccat |
12164515 |
T |
|
| Q |
206 |
gtagataaac |
215 |
Q |
| |
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||| |||||| |
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| T |
12164516 |
gtaaataaac |
12164525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 12175836 - 12176049
Alignment:
| Q |
1 |
ttcttagaaatccacctctctggtttaaactccaagcaatcttctccccaaatttcctcaactcttccaattgaatatagagaatacacaatcattgtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||| || ||||| | || |||||||||||||| |||||||||| |
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| T |
12175836 |
ttcttagaaatccacctctctggtttaaatttcaaacaatcttctccccatatttcctcgacccttccgaccgagtatagagaatacactatcattgtat |
12175935 |
T |
|
| Q |
101 |
ttgacttaatcttatgtccactaggaagtacatctggtttcaatgaagatttatgctcaaaagggacaggtggataaagtcttaaggattcacacaaagc |
200 |
Q |
| |
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||| |||| | |||| ||||||||||| ||||| | ||| |||| ||||||||||| ||||| || || |||||||| || |||| |||||| ||||| |
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| T |
12175936 |
ttggtttaaccctatgcccactaggaagcacatcagattttaatgctgatttatgctctaaaggaaccggaggataaagcctcaaggcttcacataaagc |
12176035 |
T |
|
| Q |
201 |
tgcatgtagataaa |
214 |
Q |
| |
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| T |
12176036 |
tccatgtaaataaa |
12176049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 337865 - 337818
Alignment:
| Q |
6 |
agaaatccacctctctggtttaaactccaagcaatcttctccccaaat |
53 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
337865 |
agaaatccacctctctggcttgaactccaagcaatcttctccccaaat |
337818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 341903 - 341856
Alignment:
| Q |
6 |
agaaatccacctctctggtttaaactccaagcaatcttctccccaaat |
53 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
341903 |
agaaatccacctctctggcttaaactccaagcaatcttttccccaaat |
341856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 377615 - 377491
Alignment:
| Q |
10 |
atccacctctctggtttaaactccaagcaatcttctccccaaatttcctcaactcttccaattgaatatagagaatacacaatcattgtatttgacttaa |
109 |
Q |
| |
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||||| |||||||| || ||||||||||||||||||||||| || || |||| ||| || |||||||| | |||| | | || |||||||||| |||| |
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| T |
377615 |
atccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaa |
377516 |
T |
|
| Q |
110 |
tcttatgtccactaggaagtacatc |
134 |
Q |
| |
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| |||| ||||| ||||||||||| |
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| T |
377515 |
taatatgaccacttggaagtacatc |
377491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 13101154 - 13101231
Alignment:
| Q |
117 |
tccactaggaagtacatctggtttcaatgaagatttatgctcaaaagggacaggtggataaagtcttaaggattcaca |
194 |
Q |
| |
|
|||||||||||||| ||| | ||| | |||| || ||||||||||||| ||||| |||||||| || |||| |||||| |
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| T |
13101154 |
tccactaggaagtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcaca |
13101231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 29669354 - 29669306
Alignment:
| Q |
7 |
gaaatccacctctctggtttaaactccaagcaatcttctccccaaattt |
55 |
Q |
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|||| ||||||||| |||||||| |||||||||||||| ||||| |||| |
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| T |
29669354 |
gaaagccacctctccggtttaaattccaagcaatcttccccccatattt |
29669306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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