View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_49 (Length: 217)
Name: NF16524_low_49
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 33158641 - 33158484
Alignment:
| Q |
19 |
acctgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctc |
118 |
Q |
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| T |
33158641 |
acctgatgccttttatggttgcaaagtgatgtaacacataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcattccattcctc |
33158542 |
T |
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| Q |
119 |
cacaataggaatccacacaatctggtgttggcttcctgttttctggatatgatcataa |
176 |
Q |
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| T |
33158541 |
cacaataggaatccacacaatctggtgttggcttcctgttttctggatatgatcataa |
33158484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 33181484 - 33181327
Alignment:
| Q |
19 |
acctgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctc |
118 |
Q |
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| T |
33181484 |
acctgatgccttttatggttgcaaagtgatgtaacacataccatggcatcttagacttcaaggaatcaaacttcttcctccccctatcattccattcctc |
33181385 |
T |
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| Q |
119 |
cacaataggaatccacacaatctggtgttggcttcctgttttctggatatgatcataa |
176 |
Q |
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| T |
33181384 |
cacaataggaatccacacaatctggtgttggcttcctgttttctggatatgatcataa |
33181327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 33140291 - 33140137
Alignment:
| Q |
22 |
tgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccac |
121 |
Q |
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| T |
33140291 |
tgatgcctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcttcaacttatcattccattcctccac |
33140192 |
T |
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| Q |
122 |
aataggaatccacacaatctggtgttggcttcctgttttctggatatgatcataa |
176 |
Q |
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||| |||| ||||||||||| |||||||||||| ||||||| |||||||||||| |
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| T |
33140191 |
aatgggaacccacacaatcttgtgttggcttccagttttctttatatgatcataa |
33140137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 33288011 - 33288148
Alignment:
| Q |
22 |
tgatgccttttatggttgcaaagtgatgtaacacataccatggcattttagacttcaaggaatcaaacttcttcctccccctatcattccattcctccac |
121 |
Q |
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|||||||||| || | |||||||||||| || |||||||| ||||| || |||||||| |||||||| || |||||| | ||||| ||||||| ||||| |
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| T |
33288011 |
tgatgcctttaattggtgcaaagtgatgcaaaacataccaaggcatctttgacttcaaagaatcaaattttttcctcaacttatcagtccattcatccac |
33288110 |
T |
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| Q |
122 |
aataggaatccacacaatctggtgttggcttcctgttt |
159 |
Q |
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| T |
33288111 |
aacgggaatccacacaatcttgtactggcttcctgttt |
33288148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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