View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16524_low_5 (Length: 597)
Name: NF16524_low_5
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 20 - 587
Target Start/End: Original strand, 46731424 - 46731984
Alignment:
| Q |
20 |
ggggccattggaaagagacataattggacaaggatggttttaatgggacaaaacacatagcataaaacgcagcaccttgtgttcaccttcttcatttgtc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46731424 |
ggggccattggaaagagacataattggacaaggatggttttaatgggacaaaacacatagcataaaacgcagcaccttgtgttcaccttctacatttgtc |
46731523 |
T |
|
| Q |
120 |
cataaaagcaagcagacatgcatatgaacaataataatcacattaattaaattactgtatcgttgtgaacattaaaatcttggggatggtggagaaaaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46731524 |
cataaaagcaagcagacatgcatatgaacaataataatcacattaattaaattactgtatcgttgtgaacattaaaatcttggggatggtggagaaaaag |
46731623 |
T |
|
| Q |
220 |
taaacttggtcaccatcgataactgtttttaactgaaaaagtgcaaacaatgcccctcaaatcacgagggctaaggtgggtagagaaatagtagtatatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46731624 |
taaacttggtcaccatcgataactgtttttaactgaaaaagtgcaaacaatgcccctcaaatcacgagggctaaggtgggtagagaaatagtagtatatt |
46731723 |
T |
|
| Q |
320 |
caatatttatattgatatgatatgattaatagtatttcacttttgttaattattataagcataggcataacatcatcaatagttgtaatattttgtctat |
419 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46731724 |
caatatttatattcatatgatatgattaatagtatttcacttttgttaattattataagcataggcataacatcatcaatagttgtaatattttgtctat |
46731823 |
T |
|
| Q |
420 |
attatctgtgcaatgtgcatactgaatgataatagaaccaaaaaaggtacggatattttgccttatgtctttgattgtcatatatcacttctactggcag |
519 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46731824 |
attatc-------tgtgcatactgaatgataatagaaccaaaaaaggtacggatattttgccttatgtctttgattgtcatatatcacttctactggcag |
46731916 |
T |
|
| Q |
520 |
aggttgttatctttgtgcactccaaaacaaatctgaccctctgccgtgccgtgctgttctgtgctgct |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46731917 |
aggttgttatctttgtgcactccaaaacaaatctgaccctctgccgtgccgtgctgttctgttctgct |
46731984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University