View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_52 (Length: 201)
Name: NF16524_low_52
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 29995689 - 29995524
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29995689 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
29995590 |
T |
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| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttcttcat |
185 |
Q |
| |
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|||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29995589 |
tggtgcaacagggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttcttcat |
29995524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 30043520 - 30043682
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
30043520 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattgttgtgctctctctagattcacgagggactagtaa |
30043619 |
T |
|
| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttctt |
182 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30043620 |
cggtgctacggggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttctt |
30043682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 29965198 - 29965034
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||| |||||| | |||||||| | || ||| |
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| T |
29965198 |
ctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataa |
29965099 |
T |
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| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttcttca |
184 |
Q |
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||| | || |||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
29965098 |
gggtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttca |
29965034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 30009600 - 30009764
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||| |||||| | |||||||| | || ||| |
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| T |
30009600 |
ctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataa |
30009699 |
T |
|
| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttcttca |
184 |
Q |
| |
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||| | || |||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
30009700 |
gggtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttca |
30009764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 30068037 - 30068201
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||| || || |||||||| | | | ||||||||||||| |
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| T |
30068037 |
ctctccctattgcccatgcatttaccataattctcgtcttttcctttataaaataatcatcaattgttatgttctctctacatttaggagggactagtaa |
30068136 |
T |
|
| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttcttca |
184 |
Q |
| |
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||||| || || || ||||||||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
30068137 |
gggtgcaacaggatacagtcttaaggtttcatcaaccaccatatctaagtaattcaacttcttca |
30068201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 30007478 - 30007314
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
| |
|
||||||| || ||||||||||||||||||| ||| ||||||| | |||||||||| ||||||||| || ||||||||||| | |||||||||| || ||| |
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| T |
30007478 |
ctctcccaatagcccatgcatttactataactcgagtctttttcgttataaaatatccatcaattgttatgctctctctacattcacgagggattaataa |
30007379 |
T |
|
| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttcttca |
184 |
Q |
| |
|
||| | || || |||||||||||||| ||||||| |||||||||||| ||||| |||||||||| |
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|
| T |
30007378 |
gggtccaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaacttcttca |
30007314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 30001362 - 30001198
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||| |||||||| || || |||||||| | |||||||||| || ||| |
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| T |
30001362 |
ctctcccaattgcccatgcatttactataactcgtgtcttttcttttatagaataatcatcaattgttatgttctctctacattcacgagggattaataa |
30001263 |
T |
|
| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttcttca |
184 |
Q |
| |
|
||||| || || |||||||||||||| ||||||| |||||||||| ||||| || ||||||| |
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| T |
30001262 |
aggtgcaacaggataaagtcttaaggtttcatcaaccaccatatctaggtaattaaaattcttca |
30001198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 29946969 - 29946808
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
| |
|
||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| || | ||||||||| | |||||||||| || || |
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| T |
29946969 |
ctctctctatagcccatgcatttactataactcgtgtcttttccattataaaatatccatcaattgttatactctctctacattcacgagggagtaacaa |
29946870 |
T |
|
| Q |
120 |
tggtgctacggggtaaagtcttaaggtctcatcaataaccatatctaaataattcaacttct |
181 |
Q |
| |
|
||||| || |||||||||||||| || |||| || ||||||||||| ||| | ||||||| |
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|
| T |
29946869 |
gggtgcaacagggtaaagtcttaaagtttcatgaaccaccatatctaagtaacttaacttct |
29946808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 29953930 - 29953807
Alignment:
| Q |
20 |
ctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaa |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| || ||||||||| | |||||||||| || ||| |
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| T |
29953930 |
ctctccctatagcccatgcatttactataactcgagtcttttcctttataaaatatccatcaattgttacactctctctacattcacgagggagtaataa |
29953831 |
T |
|
| Q |
120 |
tggtgctacggggtaaagtcttaa |
143 |
Q |
| |
|
||||| || |||||||||||||| |
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| T |
29953830 |
gggtgcaacagggtaaagtcttaa |
29953807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 29944982 - 29944833
Alignment:
| Q |
35 |
atgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaatggtgctacggggta |
134 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| || || |||||||| | |||||||||| || || |||| || || | |
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| T |
29944982 |
atgcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatg |
29944883 |
T |
|
| Q |
135 |
aagtcttaaggtctcatcaataaccatatctaaataattcaacttcttca |
184 |
Q |
| |
|
||||||||| || ||||||| ||||||||||| ||||| || ||||||| |
|
|
| T |
29944882 |
aagtcttaaagtttcatcaaccaccatatctaagtaattaaaattcttca |
29944833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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