View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_8 (Length: 545)
Name: NF16524_low_8
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 35028694 - 35029220
Alignment:
| Q |
1 |
agtgttgctgagagttcacatacatttcttagggtaaaaggttattgattctcaagactctagaaaagggttttctaaagaatannnnnnnn-catcatt |
99 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35028694 |
agtgatgctgagagttcacatacatttcttagggtaaaaggttattgattctcaagactctagaaaagggttttctaaagaatatatttttttcatcatt |
35028793 |
T |
|
| Q |
100 |
ggagtgggtcttcaacttgaaggtaacaaggttcagattttaggtgttcaagatttggtgttttgaagtgggtgattcaataaaataaaggatattcata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35028794 |
ggagtgggtcttcaacttgaaggtaacaaggttcagattttaggtgttcaagatctggtgttttgaagtgggtgattcaataaaataaaggatattcata |
35028893 |
T |
|
| Q |
200 |
tattctaatattgttcaaggatcttttatcgtttcacataatctgatcaattggatgcacgagatcaagtcaaatgtccaatnnnnnnnnnnnnntttat |
299 |
Q |
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| T |
35028894 |
tattctaatattgtttaaggatcttgtatcgtttcatataatctgactaattggatgcaccagatcaaatcaaatgtccaat----tttatattttttat |
35028989 |
T |
|
| Q |
300 |
tttaaaataaaaaacttcaatacatgcctaaaattaacttgcaaaatgcttttcattacacaaatgggttatgtctcttatatatcaacaatttatctca |
399 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
35028990 |
tttaaaataaaaaacttcagtacatgcctaaaataaacttgcaaaatgcttttcattacacaaatgagttatgtctcttatatatcaacaatttatgtca |
35029089 |
T |
|
| Q |
400 |
ttcatagtttatagatgagatttaaccacttacatttgaatttcaagatcataaatatgcgaaccttgccaactcttctagt-ctcacnnnnnnngcttt |
498 |
Q |
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|||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||| |
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| T |
35029090 |
ttcatagtttataggtgagatttaaacactcatgtttgaatttcaagatcataaatatgggaagcttgccaactcttctagtcctcactttttttgcttt |
35029189 |
T |
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| Q |
499 |
gtaattattccctatattcttagatcatgtt |
529 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
35029190 |
gtaattattccccatattcttagatcatgtt |
35029220 |
T |
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