View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16524_low_9 (Length: 532)
Name: NF16524_low_9
Description: NF16524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16524_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 296 - 530
Target Start/End: Complemental strand, 7564034 - 7563800
Alignment:
| Q |
296 |
gggagcaagaatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtaggacgaccc |
395 |
Q |
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| T |
7564034 |
gggagcaagaatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtaggacgaccc |
7563935 |
T |
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| Q |
396 |
tttccgtggagatgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagat |
495 |
Q |
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| T |
7563934 |
tttccgtggagatgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagat |
7563835 |
T |
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| Q |
496 |
ggcgatgatgaacacgactgatgatgtccatctca |
530 |
Q |
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| T |
7563834 |
gacgatgatgaacacgactaatgatgtcaatctca |
7563800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 7564329 - 7564132
Alignment:
| Q |
1 |
caatccaaaatcagcaacctacatttcaaaatgcaattaataataagtaataaaacttctttaacatgaagggtaaaaattaaatagttgagatagataa |
100 |
Q |
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| T |
7564329 |
caatccaaaatcagcaacctacatttcaaaatgcaattaataataagtaataaaacttctttaacatgaagggtaaaaattaaatagttgagatagataa |
7564230 |
T |
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| Q |
101 |
aaataaataagtaaataggaagaacctttgcttcaaagctatcatcaataaggacatttgcagcttttatatcacgatggataatgcgtggatgacct |
198 |
Q |
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| T |
7564229 |
aaataaataagtaaacaggaagaacctttgcttcaaagctatcatcaataaggacatttgcagcttttatatcacgatggataatgcgtggatgacct |
7564132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 408 - 530
Target Start/End: Original strand, 33145653 - 33145775
Alignment:
| Q |
408 |
tgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagatggcgatgatgaa |
507 |
Q |
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| T |
33145653 |
tgatattccaaagttttatttggaacaaattcataaaccaacattctctgtccaccagaaacacaatatccaacaagcgacacaagatgacgatgatgaa |
33145752 |
T |
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| Q |
508 |
cacgactgatgatgtccatctca |
530 |
Q |
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| T |
33145753 |
cacgactaatgatatcaatctca |
33145775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 33145448 - 33145531
Alignment:
| Q |
305 |
aatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtagg |
388 |
Q |
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| T |
33145448 |
aatcttacaatcttcatgaaggtaagcaagtcctctagcagatcctaatgcaattctcattctagtaggccaatccatggtagg |
33145531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 33145283 - 33145348
Alignment:
| Q |
123 |
aacctttgcttcaaagctatcatcaataaggacatttgcagcttttatatcacgatggataatgcg |
188 |
Q |
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| T |
33145283 |
aaccttagcttcgaagctatcatcaattagaacattagcagccttaatatcacggtggataatgcg |
33145348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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