View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16525_high_1 (Length: 765)

Name: NF16525_high_1
Description: NF16525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16525_high_1
NF16525_high_1
[»] chr2 (1 HSPs)
chr2 (18-757)||(42960684-42961424)
[»] chr5 (1 HSPs)
chr5 (579-745)||(35607889-35608055)
[»] chr8 (3 HSPs)
chr8 (242-497)||(5503504-5503759)
chr8 (658-735)||(11791979-11792056)
chr8 (670-735)||(29858345-29858410)
[»] chr6 (4 HSPs)
chr6 (668-735)||(7712361-7712428)
chr6 (669-731)||(10890479-10890538)
chr6 (681-743)||(473905-473967)
chr6 (669-734)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (670-743)||(3182435-3182508)
chr7 (668-727)||(37702076-37702135)
[»] chr3 (2 HSPs)
chr3 (659-735)||(13873370-13873445)
chr3 (669-722)||(32783461-32783514)
[»] chr4 (1 HSPs)
chr4 (668-727)||(56081265-56081324)
[»] chr1 (1 HSPs)
chr1 (659-714)||(2443403-2443458)


Alignment Details
Target: chr2 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 18 - 757
Target Start/End: Complemental strand, 42961424 - 42960684
Alignment:
Q  18 atataacatatctttgaatttggattaaaaataactcaatcctnnnnnnn-gaaatcggtccattcacgtcttagaatagacatctaaagcatgacttag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961424 atataacatatctttgaatttggattaaaaataactcaatcctaaaaaaaagaaatcggtccattcacgtcttagaatagacatctaaagcatgacttag 42961325  T
Q  117 gtggtctaactcaattctacaaaaccgccttataaattgtacttagttgaaaattaagcagttcatacatttaaaaatggtttacaatcacatgatgact 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961324 gtggtctaactcaactctacaaaaccgccttataaattgtacttagttgaaaattaagcagttcatacatttaaaaatggtttacaatcacatgatgact 42961225  T
Q  217 gaaaatgagtaatgctaaatattggtgcaggaaaaagaccaaaagcaatgggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactagg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961224 gaaaatgagtaatgctaaatattggtgcaggaaaaagaccaaaagcaatgggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactagg 42961125  T
Q  317 aaatgatagggagagtgaagtgattgtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961124 aaatgatagggagagtgaagtgattgtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaac 42961025  T
Q  417 ttgaaaatccctgtggtacttgacaacagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaac 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961024 ttgaaaatccctgtggtacttgacaacagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaac 42960925  T
Q  517 aatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattcattgccaccatgg 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960924 aatcattgatagaaacagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattcattgccaccatgg 42960825  T
Q  617 tttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatgg 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42960824 tttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacacacaaatttgtcattaaatttcgacaacaaattagatgg 42960725  T
Q  717 ttaacatagttcaaatatgcggctaatcaagtttagtatat 757  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42960724 ttaacatagttcaaatatgcggctaatcaagtttagtatat 42960684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 579 - 745
Target Start/End: Original strand, 35607889 - 35608055
Alignment:
Q  579 tttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacac 678  Q
    ||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | | ||||| ||||    
T  35607889 tttggacagaccaatgacagcattcattgccaccatggtttgttgtcagctgagatatgtcttcactcatcacctaatttgagttgtttaattttcacac 35607988  T
Q  679 aaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatca 745  Q
    | ||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  35607989 acaaaattgacattaaatttctagaacaaattagatggttaacatagttcaaatatgcagttaatca 35608055  T

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Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 242 - 497
Target Start/End: Original strand, 5503504 - 5503759
Alignment:
Q  242 tgcaggaaaaagaccaaaagcaatgggggtgattttcaaggatgaaaatgggaaacagcataaggcaatactaggaaatgatagggagagtgaagtgatt 341  Q
    |||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||| ||| ||||||   | |||||||||| | | |||||||||||     
T  5503504 tgcaggtaagagaccaaaagcaataggggttattttcaatgatgaaaatgggaaacaacatgaggcaaggttgggaaatgatatgcaaagtgaagtgata 5503603  T
Q  342 gtgtctagtggggcaattggaactcctcaaatgctattactcagtggaattggcccaaaagcagaacttgagaacttgaaaatccctgtggtacttgaca 441  Q
     |||||||||||||||||||  |||||||||||||||| || ||||||||||| || ||||  |||||| |||||||||| ||| | ||||| ||| |||    
T  5503604 ttgtctagtggggcaattgggtctcctcaaatgctattgctaagtggaattggtcctaaagatgaacttcagaacttgaacatctcagtggtccttaaca 5503703  T
Q  442 acagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcct 497  Q
    |    |||||||||||||| |||   |||||||| ||||||||| |||||||||||    
T  5503704 atccttttgttgggaagggaatgatagataatcctatgaacacagtttttgttcct 5503759  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 658 - 735
Target Start/End: Original strand, 11791979 - 11792056
Alignment:
Q  658 tgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 735  Q
    |||||| ||| ||||||||| || |||||| ||| ||||||||||||||||||||| |||||||| | |||| |||||    
T  11791979 tgagttgtgtgattttgacataagaatttgacatcaaatttcgacaacaaattagacggttaacacaattcacatatg 11792056  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 735
Target Start/End: Original strand, 29858345 - 29858410
Alignment:
Q  670 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 735  Q
    |||||| ||||||||||| ||| ||||||||||  ||| ||||| |||||||||| ||||||||||    
T  29858345 ttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatg 29858410  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 7712428 - 7712361
Alignment:
Q  668 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 735  Q
    ||||||||||||  ||||||  |  ||||||||||||||  |||||||||||||||||||||||||||    
T  7712428 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacatagttcaaatatg 7712361  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 731
Target Start/End: Complemental strand, 10890538 - 10890479
Alignment:
Q  669 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa 731  Q
    |||||||||||||  |||| |||||| ||||||||||||| ||||||||||||| ||||||||    
T  10890538 attttgacacaaa--tttgacattaa-tttcgacaacaaactagatggttaacagagttcaaa 10890479  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 743
Target Start/End: Complemental strand, 473967 - 473905
Alignment:
Q  681 aaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 743  Q
    ||||||| ||| ||||||| || |||||||||||| ||||||||||| | ||||| |||||||    
T  473967 aaatttgacatgaaatttcaaccacaaattagatgattaacatagtttacatatgtggctaat 473905  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 734
Target Start/End: Complemental strand, 12117214 - 12117149
Alignment:
Q  669 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatat 734  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||| ||| ||||||||  ||||||||||||    
T  12117214 attttgacacacaaatttgacatcaaacttcaacaacaatttatatggttaatgtagttcaaatat 12117149  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 743
Target Start/End: Original strand, 3182435 - 3182508
Alignment:
Q  670 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 743  Q
    |||||| ||||||||||| ||  ||||||||||||| | ||||||||||||  ||||| ||||||| |||||||    
T  3182435 ttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggctaat 3182508  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 727
Target Start/End: Complemental strand, 37702135 - 37702076
Alignment:
Q  668 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 727  Q
    |||||||| ||| ||||||||||| ||||||| |||||||||||||| ||| | ||||||    
T  37702135 tattttgaaacacaaatttgtcatcaaatttcaacaacaaattagatagttgatatagtt 37702076  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 659 - 735
Target Start/End: Original strand, 13873370 - 13873445
Alignment:
Q  659 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 735  Q
    ||||| ||||| ||||||||||||||| | ||||||| |||||||| ||| || || |||||||||||| |||||||    
T  13873370 gagttgtgttactttgacacaaaaatt-gacattaaaattcgacaaaaaactaaattgttaacatagtttaaatatg 13873445  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 722
Target Start/End: Complemental strand, 32783514 - 32783461
Alignment:
Q  669 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaaca 722  Q
    ||||||||||| ||||||| | | ||||||| ||||||||||||| ||||||||    
T  32783514 attttgacacacaaatttgacttcaaatttcaacaacaaattagacggttaaca 32783461  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 727
Target Start/End: Complemental strand, 56081324 - 56081265
Alignment:
Q  668 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 727  Q
    |||||||||||||||||||| ||| ||| || |||||||| ||||||| |||||| ||||    
T  56081324 tattttgacacaaaaatttgacataaaaatttgacaacaatttagatgattaacacagtt 56081265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 714
Target Start/End: Original strand, 2443403 - 2443458
Alignment:
Q  659 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagat 714  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||| ||||||||||    
T  2443403 gagttgtgttattttgacacaaaaattcaacatcaaatttcgacaccaaattagat 2443458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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