View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16525_low_12 (Length: 211)
Name: NF16525_low_12
Description: NF16525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16525_low_12 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 4303044 - 4302840
Alignment:
| Q |
8 |
ccaacaatatcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaacca |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4303044 |
ccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaacca |
4302945 |
T |
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| Q |
108 |
acacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4302944 |
acacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtga |
4302845 |
T |
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| Q |
207 |
gagta |
211 |
Q |
| |
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||||| |
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| T |
4302844 |
gagta |
4302840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 35681845 - 35681638
Alignment:
| Q |
8 |
ccaacaatatcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaacca |
107 |
Q |
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||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
35681845 |
ccaacaatagcagactcacttgataattctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaacca |
35681746 |
T |
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| Q |
108 |
acacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacat---gcagaacaccaaatgg |
203 |
Q |
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| T |
35681745 |
acacagtaaacgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatgg |
35681646 |
T |
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| Q |
204 |
tgagagta |
211 |
Q |
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|||||||| |
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| T |
35681645 |
tgagagta |
35681638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 31635698 - 31635527
Alignment:
| Q |
40 |
ataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttatttgagag |
139 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
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| T |
31635698 |
ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag |
31635600 |
T |
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| Q |
140 |
aataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtgagagta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31635599 |
aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagta |
31635527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 31635922 - 31635882
Alignment:
| Q |
8 |
ccaacaatatcagaatcacttgataattctatataagttag |
48 |
Q |
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||||||||| |||| |||||||||||||||||||||||||| |
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| T |
31635922 |
ccaacaatagcagactcacttgataattctatataagttag |
31635882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 37192926 - 37192738
Alignment:
| Q |
24 |
cacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatc |
123 |
Q |
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||||||||||||||||| ||| ||||||| ||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||| | ||| |
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| T |
37192926 |
cacttgataattctatacaagctagagcattgttaagtgatgcctgaccatgttgtacttgaagtataggaatgaatgaaaccaacacagtaagtggatc |
37192827 |
T |
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| Q |
124 |
cccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtgagagta |
211 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
37192826 |
cctttttatttgagagaataaccaatatcctttttcatgaagtccaagtaaaggtttaataacatgcagaacatcaaatggtgagagta |
37192738 |
T |
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