View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16525_low_2 (Length: 541)
Name: NF16525_low_2
Description: NF16525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16525_low_2 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 290 - 541
Target Start/End: Complemental strand, 37245345 - 37245094
Alignment:
| Q |
290 |
cttgaaatgaattccttttagtccacgtttagtgtctaacaattttttgttcccaccatatctatatgggacttataatttgatgtgatccaggcatgtg |
389 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245345 |
cttgaaatgaattccttatagtccacgtttagtgtctaacaattttttgttcccaccatatctatatgggacttataatttgatgtgatccaggcatgtg |
37245246 |
T |
|
| Q |
390 |
aattttaaccataaaaagagtgtgtcaaaaagggtatactgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagt |
489 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245245 |
aattttaaccataaaaagagtgtgtcgaaaagggtatactgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagt |
37245146 |
T |
|
| Q |
490 |
aagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttc |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245145 |
aagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttc |
37245094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 37245626 - 37245407
Alignment:
| Q |
9 |
aacacagattacgtgcaattgcagaaaaagaaggaaattgtagagtgaatcaaggagattccaccaaaagttgcagaaaaacgcaagagaaaacaaaagt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37245626 |
aacacaaattacgtgcaattgcagaaaaagaaggaaattgtagagtgaatcaaggagattccaccaaaagttgcagtaaaacgcaagagaaaacaaaagt |
37245527 |
T |
|
| Q |
109 |
gtgagccaattcacgaaagactcacgataccagggaaattaaaacaccagtacagatacctaatagatagatagctcatataataatgggtacaaatcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245526 |
gtgagccaattcacgaaagactcacgataccatggaaattaaaacaccggtacagatagctaatagatagatagctcatataataatgggtacaaatcca |
37245427 |
T |
|
| Q |
209 |
tagcactggattggagatgc |
228 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37245426 |
tagcactggattggagatgc |
37245407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 443 - 541
Target Start/End: Complemental strand, 37283654 - 37283556
Alignment:
| Q |
443 |
tccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttc |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37283654 |
tccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttc |
37283556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 429 - 538
Target Start/End: Complemental strand, 37965871 - 37965762
Alignment:
| Q |
429 |
tgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccat |
528 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||| ||||||||||| ||||| ||||||| | ||||| |||| |||| |||||||||||||||| |
|
|
| T |
37965871 |
tgtgttgttagcactccttttgataaaattgacgaaccgtgtatatagtctgaatgatagtaaaactaaaaatgaaggtagcaacaacaagagacaccat |
37965772 |
T |
|
| Q |
529 |
agcccaaggg |
538 |
Q |
| |
|
|||||||||| |
|
|
| T |
37965771 |
agcccaaggg |
37965762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 540
Target Start/End: Complemental strand, 37319381 - 37319304
Alignment:
| Q |
463 |
aactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggtt |
540 |
Q |
| |
|
||||| ||||| |||||||| |||||| | |||||||||||| | ||||||||||||||| || |||||||| ||||| |
|
|
| T |
37319381 |
aactgagtatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagagacaatagcccacgggtt |
37319304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 446 - 541
Target Start/End: Original strand, 16571841 - 16571936
Alignment:
| Q |
446 |
ttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttc |
541 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||||||| |||||||||||||||| |||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
16571841 |
ttttgataaaattgggcaattgagtaaccagtttgaatactagtaagagcaaaaagaaagatggcagcaacaagtgacaccatagaccaagggttc |
16571936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University