View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16525_low_3 (Length: 440)
Name: NF16525_low_3
Description: NF16525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16525_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 44171104 - 44170675
Alignment:
| Q |
1 |
aagtctaattaaattattgttttgatcattcgttttttattagaagtagaacaccttaacaacttaaactcaattgcttagattaaccgacaattatttt |
100 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44171104 |
aagtctaatttaattattgttttgatcattccttttttattagaagtagaacaccttaacaacttaaactcaattgcttagattaaccgacaattatttt |
44171005 |
T |
|
| Q |
101 |
aa--cagacattgttatatgtttctttcatataattcatatcaactggttcatttgattgataaatgataattgcatgattacacgccggcaccagcaac |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44171004 |
aaaacagacattgttatatgtttctttcatataattcatatcaactggttcatttgattgataaatgatatttgcatgattacacgccggcaccagcaac |
44170905 |
T |
|
| Q |
199 |
tatcataaaacatgatggtaattgtcacttcatcatgattcacactagtgcacaatctatcaatttcgtcgctgtttctgtttggctcagattatttttt |
298 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44170904 |
tatcataaaacatgatggtaattgtcacttc-tcatgattcacactagtgcacaatctatcaatttcgtcgctgtttctgtttggctcagattatttttt |
44170806 |
T |
|
| Q |
299 |
gcggtttgtcgctag---tgcataa----nnnnnnnnagtggaattgaaaatcacatcttcggacaaatcccagaacatgacacttgccagattttagcc |
391 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44170805 |
gcggtttgtcgctagccaggcataatttttttttttgagtggaattgaaaatcacatcttcggacaaatcccagaacatgacacttgccagattttagcc |
44170706 |
T |
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| Q |
392 |
gatgaattttacaaagagaaatgatatttgt |
422 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44170705 |
gatgaattttacaaagagaaatgatatttgt |
44170675 |
T |
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