View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16525_low_4 (Length: 417)
Name: NF16525_low_4
Description: NF16525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16525_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 41161386 - 41161091
Alignment:
| Q |
9 |
catcatcaaaattgacaaaatgtgcagttacagttcacaaagaatccaatcactactaattgatgtgcgtatctatgatgaagatgatcacgataggaat |
108 |
Q |
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| T |
41161386 |
catcatcaaaattgacataatgtgcagttacagttcacaaagaatccaatcactactaattgatgtgcgtatctatgatgaagatgatcacgataggaat |
41161287 |
T |
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| Q |
109 |
cttgatataaaacacaggagatgcaagtaataattcatatatgctctagatcaaactgtatttatccttatactattactagtaattctttacaaaatcc |
208 |
Q |
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| T |
41161286 |
cttgatataaaacacaggagatgcaagtaataattcatatatgctctagatcaaactgtatttatccttatactattactagtaattctttacaaaatcc |
41161187 |
T |
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| Q |
209 |
acaaaagattcttcattgaggacagcatttgaggaagaacctgtagaagctgctaattttgtttgacatggttagtgctgcaagacttttattccc |
304 |
Q |
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| T |
41161186 |
acaaaagattcttcgttgaggacagcatttgaggaagaacctgtagaagctgctaattttgtttgacatggttagtgctgcaagacttttattccc |
41161091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 332 - 401
Target Start/End: Complemental strand, 41161095 - 41161026
Alignment:
| Q |
332 |
ttccctatcctttggtatttcctccattttattaggatctcttcaaccccactgcctctcaccttgttcc |
401 |
Q |
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| T |
41161095 |
ttccctatcctttggtatttcctccattttattaggatctcttcaaccccactgcctctcaccttgttcc |
41161026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 41163707 - 41163663
Alignment:
| Q |
262 |
taattttgtttgacatggttagtgctgcaagacttttattcccct |
306 |
Q |
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| T |
41163707 |
taattttgtttgacatggttagtgctgcaggacttttattcccct |
41163663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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