View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16525_low_5 (Length: 401)
Name: NF16525_low_5
Description: NF16525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16525_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 9165334 - 9164944
Alignment:
| Q |
19 |
atttggaggtaaatggtctatctgagcaaactcttatcagttacccttgtttatctgttacttgagttacgatttgacccagctttaggaacctaaccca |
118 |
Q |
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| T |
9165334 |
atttggaggtaaatggtctatctgagcaaactcttatcagttacccttgtttatctgttagttgagttacgatttgacccagctttaggaacctaaccca |
9165235 |
T |
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| Q |
119 |
tgagactggtgacaggcgtccttaatatttatatcttttggaaaattctacatat---------------gtggatgtggacaattccatatttggtttc |
203 |
Q |
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| T |
9165234 |
tgagactggtgacaggcgtccttgatatttatatcttttggaaaattgtacatatagagtataacatggagtggatgtggacaattccatatttggtttc |
9165135 |
T |
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| Q |
204 |
tttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggatgatgataatgaggaggaggaggatgaagataatgaagaa |
303 |
Q |
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| T |
9165134 |
tttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggatgatgatgatgatgaggaggaggatgaagataatgacgaa |
9165035 |
T |
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| Q |
304 |
gggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagaggatgatgatg |
394 |
Q |
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| T |
9165034 |
gggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagaggatgctgatg |
9164944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 174 - 389
Target Start/End: Complemental strand, 9152335 - 9152123
Alignment:
| Q |
174 |
gtggatgtggacaattccatatttggtttctttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggatgatgataat |
273 |
Q |
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| T |
9152335 |
gtggatgaggaaaattccatatttggtttctttggttttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggacgatgag--- |
9152239 |
T |
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| Q |
274 |
gaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaat |
373 |
Q |
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| T |
9152238 |
gaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaatctgggaaagagctgaagaagctgcttgggcgaactggtggtctaagtgaat |
9152139 |
T |
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| Q |
374 |
ctgatgaagaggatga |
389 |
Q |
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| T |
9152138 |
ctgatgatgatgatga |
9152123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 9179434 - 9179532
Alignment:
| Q |
295 |
aatgaagaag--ggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagaggatgatga |
392 |
Q |
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| T |
9179434 |
aatgaagaagaagggaaggtctgagtaaatctgggaaagagatgaagaagctgctt-ggtgagctggtggtctaagtgaatccgatgcagatgacgatga |
9179532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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