View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16526_high_3 (Length: 430)
Name: NF16526_high_3
Description: NF16526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16526_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 10837627 - 10838030
Alignment:
| Q |
22 |
aagcggatatcttaaatggatctcaattacgtcatgactcatgacacaagtatctctatagtcttagttgtattataagaaaacatgtagctgaaacaaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10837627 |
aagcggatatcttaaatggatctcaattacgtcatgactcatgagacgagtatctctatagtcttagaagtattataagaaaacatgtagctgaaacaaa |
10837726 |
T |
|
| Q |
122 |
taattttcagagttgcaatatctagagaatttttcagtattatagtgaagttgacttagctttgaattttatgtttcaggnnnnnnnnctgtgtctgttg |
221 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10837727 |
taattttcagagttgcaatatctagagaattttacagtattatagtgaagttgacttagctttgaattttatgtttcaggttttttttctgtgtctgtta |
10837826 |
T |
|
| Q |
222 |
agtggctgcagtatctgttggttcaacacagtatgttttgttctctgcatcaaaaacttcccagttaacagatccttagcattgtcgctcactgtgagtt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10837827 |
agtggctgcagtatctgttggttcaacacagtatgttttgttctctgcatcaaaaacttcccagttaacagatccttagcattgtcgctcactgtgagtt |
10837926 |
T |
|
| Q |
322 |
tcaatggtgtaagtgcagcactctacactctcgccgcaaattccataaacccttcatcagatcaactctatcttcttctgaatgctcttgtccttcatct |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
10837927 |
tcaatggtgtaagtgcagcactctacactctcgccgcaaattccataaacccttcatcagatcaactctatcttcttctgaatgctcttgtccctcttct |
10838026 |
T |
|
| Q |
422 |
cact |
425 |
Q |
| |
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|||| |
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| T |
10838027 |
cact |
10838030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 364
Target Start/End: Complemental strand, 30350397 - 30350255
Alignment:
| Q |
222 |
agtggctgcagtatctgttggttcaacacagtatgttttgttctctgcatcaaaaacttcccagttaacagatccttagcattgtcgctcactgtgagtt |
321 |
Q |
| |
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||||||||||| || || ||||||||||||||||||||| |||||||||| | || || ||||||||| || | | |||||||||||||||||||||| |
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| T |
30350397 |
agtggctgcagcatatgctggttcaacacagtatgttttattctctgcattaggaattttccagttaaccgaacacttgcattgtcgctcactgtgagtt |
30350298 |
T |
|
| Q |
322 |
tcaatggtgtaagtgcagcactctacactctcgccgcaaattc |
364 |
Q |
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|||||||||| ||||| || || ||||| || || |||||||| |
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| T |
30350297 |
tcaatggtgtcagtgcggccctttacacccttgctgcaaattc |
30350255 |
T |
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