View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16526_high_4 (Length: 332)
Name: NF16526_high_4
Description: NF16526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16526_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 317
Target Start/End: Original strand, 14744574 - 14744861
Alignment:
| Q |
30 |
taaaataaatgaacaatataagaattatgataagagaattgtgatctaccttgtcaacttcgttttgaagtcttctgacaaggaacctatagcggttcaa |
129 |
Q |
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| T |
14744574 |
taaaataaatgaacaatataagaattatgataagagaattgtgatctaccttgtcaacttcgttttgaagtctactgactaggaacctatagcggttcaa |
14744673 |
T |
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| Q |
130 |
atcttcagttgaaatttgctccattatttcagtgaatcggcgcagctgaattctatgcaaatgaatagggttgcaataaataaaaccctagtcatttata |
229 |
Q |
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| T |
14744674 |
atcttcagttgaaatttgctccattgtttcagtgaatcggcgcagctgaattctatgcaaatgaatagggttgcaataaataaaaccctagtcatttata |
14744773 |
T |
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| Q |
230 |
ccagcgtgatagtgaaaataaggtcccgttttaatcgcgagtattgatttttactacatcctcattattacaagaaaagttcaaaagt |
317 |
Q |
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| T |
14744774 |
ccagcgtgacagcgaaaataaggtcccgttttactcgcgagtattgatttttactacatcctcattattacaagaaaagttcaaaagt |
14744861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 14738483 - 14738678
Alignment:
| Q |
30 |
taaaataaatgaacaa-tataa-gaattatgataagagaattgtgatctaccttgtcaacttcgttttgaagtcttctgacaaggaacctatagcggttc |
127 |
Q |
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| T |
14738483 |
taaaataaatgaacaaatatattgaattatgagaagagaatcgtgatctaccttatcaacttcgttttgaagaccacttgcaaggtacctatagcggttc |
14738582 |
T |
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| Q |
128 |
aaatcttcagttgaaattt----------------gctccatt-----atttcagtgaatcggcgcagctgaattctatgcaaatgaatagggttg |
202 |
Q |
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| T |
14738583 |
aaatcttcaattgaaatcttcaatcttcaattgaagctccattgtttaatttcagtgaatcggcgcagctgaattctatgcaaatgaatagggttg |
14738678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 14738771 - 14738852
Alignment:
| Q |
235 |
gtgatagtgaaaataaggtcccgttttaatcgcgagtattgatttttactacatcctcattattacaagaaaagttcaaaagt |
317 |
Q |
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|||| |||||||||||| ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14738771 |
gtgacagtgaaaataagttcccgttttcttcaggagtatttatttt-actacatcctcattattacaagaaaagttcaaaagt |
14738852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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