View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16526_high_5 (Length: 307)
Name: NF16526_high_5
Description: NF16526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16526_high_5 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: scaffold0130 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 22622 - 22334
Alignment:
| Q |
12 |
atcatcaaacggattcgagtcattagaatatccggacacagtttgagccttcaatttcttagcaactttcaac----------aaaaccaaagaacaatt |
101 |
Q |
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| T |
22622 |
atcaccaaatggattcgagtcattagaatatccggacacagtttgagtcttcaatttcttagcaactttcaactcctgaacacaaaaccaaagaacaatt |
22523 |
T |
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| Q |
102 |
caacaccaagcacaccctttaaactaattaaattcacgaaaacacaatcggtttcaggcgattctcnnnnnnncccttttctttatttgcaactaaagaa |
201 |
Q |
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| T |
22522 |
caataccaagcacacccattaaaccaattaaattcatgaaaacacaatcggtttcaagcgattctaaaaaaaacccttttctttatttgcaactaaagaa |
22423 |
T |
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| Q |
202 |
cctccatatcggtcactcagcaaactataaatttcaaaagctttgattgagctctacagattttgatttaatgtttttctacaatgaagg |
291 |
Q |
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| T |
22422 |
cc-ccatatccgtcactcagcaaactataaatttcaaaagctttgattgagctctacagattttgatttaatgtttttctacaatgaagg |
22334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 184 - 291
Target Start/End: Complemental strand, 7866278 - 7866171
Alignment:
| Q |
184 |
ttatttgcaactaaagaacctccatatcggtcactcagcaaactataaatttcaaaagctttgattgagctctacagattttgatttaatgtttttctac |
283 |
Q |
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| T |
7866278 |
ttatttgcaactaaagaacccccatatccgtcactcagcaaactataaatttcaaaagctttgattgagctctaaagattttgatttaatgtttttctac |
7866179 |
T |
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| Q |
284 |
aatgaagg |
291 |
Q |
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| T |
7866178 |
aatgaagg |
7866171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 27022014 - 27022167
Alignment:
| Q |
12 |
atcatcaaacggattcgagtcattagaatatccggacacagtttgagccttcaatttcttagcaactttcaac--------aaaaccaaagaacaattca |
103 |
Q |
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|||| |||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
27022014 |
atcaccaaatggattcgagtcatttgaatatccagacacagtatgagctttcaatttcttagcaactttcaacgcctaaacacaaccaaagaacaattca |
27022113 |
T |
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| Q |
104 |
acaccaagcacaccctttaaactaattaaattcacgaaaacacaatcggtttca |
157 |
Q |
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|||||||||||||||||||||| |||| |||||| |||||||||| |||||||| |
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| T |
27022114 |
acaccaagcacaccctttaaaccaattcaattcatgaaaacacaaccggtttca |
27022167 |
T |
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