View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16526_high_9 (Length: 217)
Name: NF16526_high_9
Description: NF16526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16526_high_9 |
 | |
|
| [»] scaffold1444 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 17999371 - 17999165
Alignment:
| Q |
1 |
tcaacaacttacatggtccctttggtggcctctgatggaagtaaagttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17999371 |
tcaacaacttacatggtccctttgttggcctctgatggaagtaaagttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgc |
17999272 |
T |
|
| Q |
101 |
tcaatgaagttctcaaagtcaagcctggaactatccctgtctgccattttgttggtaacaaggctgttgcttggttacctattcctgttgcaagtgaatc |
200 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17999271 |
tcgatgaagttctcaaagtcaagccaggaactatccctgtctgccattttgttggtaacaaggctgttgcttggttacctattcctgttgcaagtgaatc |
17999172 |
T |
|
| Q |
201 |
tgatgat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
17999171 |
tgatgat |
17999165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 17107502 - 17107667
Alignment:
| Q |
9 |
ttacatggtccctttggtggcctctgatggaagtaaagttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgctcaatgaa |
108 |
Q |
| |
|
||||||||| | |||||||| |||||||||| ||||| ||| ||| | || |||||||||||| |||||||| |||||||| || | || ||||| |
|
|
| T |
17107502 |
ttacatggtgctattggtggcttctgatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaa |
17107601 |
T |
|
| Q |
109 |
gttctcaaagtcaagcctggaactatccctgtctgccattttgttggtaacaaggctgttgcttgg |
174 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| |||||||| |
|
|
| T |
17107602 |
cttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgg |
17107667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 17117328 - 17117156
Alignment:
| Q |
9 |
ttacatggtccctttggtggcctctgatggaagtaaagttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgctcaatgaa |
108 |
Q |
| |
|
||||||||| || |||||||| |||||||||| ||||| ||| ||| || || |||||||||||| ||||||||||||||||| || ||| || | |
|
|
| T |
17117328 |
ttacatggtgccattggtggcttctgatggaactaaagctaaggcagtgactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataag |
17117229 |
T |
|
| Q |
109 |
gttctcaaagtcaagcctggaactatccctgtctgccattttgttggtaacaaggctgttgcttggttaccta |
181 |
Q |
| |
|
||||||||||||||||| |||||| ||||| | ||||||||| |||| |||||||| |||||||| |||||| |
|
|
| T |
17117228 |
gttctcaaagtcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtaccta |
17117156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 17945423 - 17945246
Alignment:
| Q |
2 |
caacaacttacatggtccctttggtggcctctgatggaagtaaagttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgct |
101 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||| |||| || ||| | || || |||||||| |||||||||||| |||| ||| |||| |
|
|
| T |
17945423 |
caacgacttacatggttccattggtggcctctgatggaactaaatccaaggcactaactatctgccaccatgatacaagaggtatggatcctaatatgct |
17945324 |
T |
|
| Q |
102 |
caatgaagttctcaaagtcaagcctggaactatccctgtctgccattttgttggtaacaaggctgttgcttggttacc |
179 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| ||||||| |||||||| |||| ||||| ||| |||| ||| |||| |
|
|
| T |
17945323 |
ctatgaagttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgcctgggtacc |
17945246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 17956359 - 17956244
Alignment:
| Q |
64 |
tgtcaccatgacacaagaggtatgaatccgaatttgctcaatgaagttctcaaagtcaagcctggaactatccctgtctgccattttgttggtaacaagg |
163 |
Q |
| |
|
||||||||||| || |||||||| |||| ||| |||| | || ||||||||||| |||||||||||| ||||||| ||||||||| |||| ||||||| |
|
|
| T |
17956359 |
tgtcaccatgatactcgaggtatggatcctaatgtgctttacgatgttctcaaagttaagcctggaactgtccctgtttgccattttattggcaacaagg |
17956260 |
T |
|
| Q |
164 |
ctgttgcttggttacc |
179 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
17956259 |
ccgttgcttgggtacc |
17956244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 17986518 - 17986421
Alignment:
| Q |
67 |
caccatgacacaagaggtatgaatccgaatttgctcaatgaagttctcaaagtcaagcctggaactatccctgtctgccattttgttggtaacaaggc |
164 |
Q |
| |
|
||||||||||| ||||||||| |||| || |||| |||||||||||||||||||||||||||| || || | || ||||||||| | |||||||| |
|
|
| T |
17986518 |
caccatgacacgagaggtatggatcctgatgtgctttatgaagttctcaaagtcaagcctggaacaattccaatatgtcattttgttagcaacaaggc |
17986421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 24 - 93
Alignment:
| Q |
110 |
ttctcaaagtcaagcctggaactatccctgtctgccattttgttggtaacaaggctgttgcttggttacc |
179 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
24 |
ttctcaaagtcaagcctggaactgtccctatttgccattttgttggtaacaaggccattgcttgggtacc |
93 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University