View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16526_low_1 (Length: 854)
Name: NF16526_low_1
Description: NF16526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16526_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 785; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 11 - 836
Target Start/End: Original strand, 30708088 - 30708914
Alignment:
| Q |
11 |
agcagagacaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcc |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708088 |
agcagagacaatgttgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcc |
30708187 |
T |
|
| Q |
111 |
tccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708188 |
tccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccg |
30708287 |
T |
|
| Q |
211 |
ctttcttgtcggaacagaaatttcctgccataaccaaaccaacagtgtggatgaaaacattagcaactattttcaattcaaccataacaaggaacagttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708288 |
ctttcttgtcggaacagaaatttcctgccataaccaaaccaacagtgtgcatgaaaacattagcaactattttcaattcaaccataacaaggaacagttt |
30708387 |
T |
|
| Q |
311 |
taggattaatggtatgaagaaaaaattatacaaacaagctcatgatttacctgagattccaatgacatccatgtcaggaaagtcactctgaagaaaatca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708388 |
taggattaatggtatgaagaaaaaattatacaaacaagctcatgatttacctgagattccaatgacatccatgtcaggaaagtcactctgaagaaaatca |
30708487 |
T |
|
| Q |
411 |
aggacattttgaacaccttttgacaccatgttcatccccatggcatcaccagtactgcaacggaaacgaatgtacaaattcttgccagcaattgtcggct |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708488 |
aggacattttgaacaccttttgacaccatgttcatccccatggcatcaccagtactacaacggaaacgaatgtacaaattcttgccagcaattgtcggct |
30708587 |
T |
|
| Q |
511 |
gaaggctctgcaatctagcaaatctgcttgatctgcacaaacccattaaattgttaatgaatgaatcaacaataacacatacccattttaattgaacaac |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708588 |
gaaggctctgcaatctagcaaatctgcttgatctgcacaaacccattaaattgttaatgaatgaatcaacaataacacatacccattttaattgaacaac |
30708687 |
T |
|
| Q |
611 |
cccggtaattcttaaaaacag--agtgatcatagttcaagaaattgaattctatatgacctcatccctccataaattggatcctattgacctctccatcc |
708 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708688 |
cccagtaattcttaaaaacagaaagtgatcatagttcaagaaattgaattctatatgacctcatccctccataaattggatcctattgacctctccatcc |
30708787 |
T |
|
| Q |
709 |
gcaacaactccaacggctaaaaccattctgtaaacctttaggttaatctaagaacaaagattttactgtgacaaaacaactgtttgtcgaagaggattaa |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30708788 |
gcaacaactccaacggctaaaaccattctgtaaacctttaggttaatctaagaactaagattttac-gtgacaaaacaactgtttgtcgaagaggattaa |
30708886 |
T |
|
| Q |
809 |
cgactaattatagatcctctccacattg |
836 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
30708887 |
caactaattatagatcctctccacattg |
30708914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 6e-55; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 39677050 - 39676833
Alignment:
| Q |
18 |
acaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcctccacac |
117 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||| | |||||| ||||| || || |||||||||||||||||||||| | |||||| | |
|
|
| T |
39677050 |
acaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagatttttaagcatgttaagctcaaccaaagactccacgc |
39676951 |
T |
|
| Q |
118 |
tagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccgctttctt |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || || || | |||||||||||| || || ||||| |||||||| |
|
|
| T |
39676950 |
tagtcttcaacactttcttcaccacctcttccttaattacagcctcacaaaccactgatttccctctcccttcaatccaattcaccgccgcagctttctt |
39676851 |
T |
|
| Q |
218 |
gtcggaacagaaatttcc |
235 |
Q |
| |
|
||| ||||| |||||||| |
|
|
| T |
39676850 |
gtccgaacaaaaatttcc |
39676833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 10047262 - 10047037
Alignment:
| Q |
11 |
agcagagacaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcc |
110 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||| ||||||||||||||||| | |||||| ||||| || || || | ||||||||||||||||| | | |
|
|
| T |
10047262 |
agcagaaacaatattactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttttaacatgttaagctcaaccaaagac |
10047163 |
T |
|
| Q |
111 |
tccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccg |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| || || || | |||||||||||| || || ||||| | |
|
|
| T |
10047162 |
tccacactaatcttcaacactttcttcaccacctcttccttaattacagcctcacacaccactgatttccctctcccttcaatccaattcaccgccgcgg |
10047063 |
T |
|
| Q |
211 |
ctttcttgtcggaacagaaatttcct |
236 |
Q |
| |
|
||||||| || ||||| ||||||||| |
|
|
| T |
10047062 |
ctttcttatccgaacaaaaatttcct |
10047037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 10867513 - 10867290
Alignment:
| Q |
12 |
gcagagacaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcct |
111 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || || |||||||||||||| | |||||| || || ||||| || ||||||||||||||||||| | || |
|
|
| T |
10867513 |
gcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10867414 |
T |
|
| Q |
112 |
ccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccgc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| || || || | |||||||||||| || || ||||| || |
|
|
| T |
10867413 |
ccacactagtcttcagcactttcttcaccacctcttccttaattacagcctcacacaccactgatttccctctcccttcaatccaattcactgccgcagc |
10867314 |
T |
|
| Q |
212 |
tttcttgtcggaacagaaatttcc |
235 |
Q |
| |
|
||||||||| ||||| |||||||| |
|
|
| T |
10867313 |
tttcttgtccgaacaaaaatttcc |
10867290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 10872799 - 10873022
Alignment:
| Q |
12 |
gcagagacaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcct |
111 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || || |||||||||||||| | |||||| || || ||||| || ||||||||||||||||||| | || |
|
|
| T |
10872799 |
gcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10872898 |
T |
|
| Q |
112 |
ccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccgc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||| || || || | ||||||||||||||| || ||||| || |
|
|
| T |
10872899 |
ccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactgatttccctctcccttcaatccagttcactgccgcagc |
10872998 |
T |
|
| Q |
212 |
tttcttgtcggaacagaaatttcc |
235 |
Q |
| |
|
||||||||| ||||| |||||||| |
|
|
| T |
10872999 |
tttcttgtccgaacaaaaatttcc |
10873022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 10877870 - 10878093
Alignment:
| Q |
12 |
gcagagacaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcct |
111 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || || |||||||||||||| | |||||| || || ||||| || ||||||||||||||||||| | || |
|
|
| T |
10877870 |
gcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10877969 |
T |
|
| Q |
112 |
ccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccgc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||| || || || | ||||||||||||||| || ||||| || |
|
|
| T |
10877970 |
ccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactgatttccctctcccttcaatccagttcactgccgcagc |
10878069 |
T |
|
| Q |
212 |
tttcttgtcggaacagaaatttcc |
235 |
Q |
| |
|
||||||||| ||||| |||||||| |
|
|
| T |
10878070 |
tttcttgtccgaacaaaaatttcc |
10878093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 10882941 - 10883164
Alignment:
| Q |
12 |
gcagagacaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcct |
111 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || || |||||||||||||| | |||||| || || ||||| || ||||||||||||||||||| | || |
|
|
| T |
10882941 |
gcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10883040 |
T |
|
| Q |
112 |
ccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccgc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||| || || || | ||||||||||||||| || ||||| || |
|
|
| T |
10883041 |
ccacactagtcttcagcactttcttcaccacatcttccttaattacagcctcacacaccactgatttccctctcccttcaatccagttcactgccgcagc |
10883140 |
T |
|
| Q |
212 |
tttcttgtcggaacagaaatttcc |
235 |
Q |
| |
|
||||||||| ||||| |||||||| |
|
|
| T |
10883141 |
tttcttgtccgaacaaaaatttcc |
10883164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 10886856 - 10887079
Alignment:
| Q |
12 |
gcagagacaatattgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttcttaagcatgttaagctcaaccagtgcct |
111 |
Q |
| |
|
||||| |||||||| |||||||| || || || || ||||| |||||||| | |||||| || || ||||| || ||||||||||||||||||| | || |
|
|
| T |
10886856 |
gcagaaacaatattactagcatgtgcgttaaagccgccaagtgcaccagccatggctgaaccggtaaggttttttagcatgttaagctcaaccaaagact |
10886955 |
T |
|
| Q |
112 |
ccacactagtcttcaacactttcttcacaacctcttccttaataacagcctcacacaccacagacttaccacgcccttcaatccagtttacagccgccgc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| || || || | |||||||||||| || || ||||| || |
|
|
| T |
10886956 |
ccacactagtcttcagcactttcttcaccacctcttccttaattacagcctcacacaccactgatttccctctcccttcaatccaattcactgccgcagc |
10887055 |
T |
|
| Q |
212 |
tttcttgtcggaacagaaatttcc |
235 |
Q |
| |
|
||||||||| ||||| |||||||| |
|
|
| T |
10887056 |
tttcttgtccgaacaaaaatttcc |
10887079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 39676825 - 39676734
Alignment:
| Q |
369 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
460 |
Q |
| |
|
||||| |||||||| |||||||| ||| | |||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
39676825 |
ccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcacc |
39676734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 358 - 460
Target Start/End: Complemental strand, 10046938 - 10046836
Alignment:
| Q |
358 |
tacctgagattccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatc |
457 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||| || || |||||||||||||| || ||||| ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
10046938 |
tacctgatataccaataacatccatatcaggaaaatcgctttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatc |
10046839 |
T |
|
| Q |
458 |
acc |
460 |
Q |
| |
|
||| |
|
|
| T |
10046838 |
acc |
10046836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 37949559 - 37949450
Alignment:
| Q |
357 |
ttacctgagattccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcat |
456 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| || ||| | |||| |||||||| || || || || ||||| || |||||||||||||||||||||| |
|
|
| T |
37949559 |
ttacctgatatgccaataacatccatgtcagggaaatcatttcgaaggaaatcaagaacgttctgcacccctttggagaccatgttcatccccatggcat |
37949460 |
T |
|
| Q |
457 |
caccagtact |
466 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37949459 |
cacccgtact |
37949450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 10867282 - 10867191
Alignment:
| Q |
369 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
460 |
Q |
| |
|
||||| |||||||| || ||||| || | |||||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
10867282 |
ccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacc |
10867191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 10873030 - 10873121
Alignment:
| Q |
369 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
460 |
Q |
| |
|
||||| |||||||| || ||||| || | |||||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
10873030 |
ccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacc |
10873121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 10878101 - 10878192
Alignment:
| Q |
369 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
460 |
Q |
| |
|
||||| |||||||| || ||||| || | |||||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
10878101 |
ccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacc |
10878192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 10883172 - 10883263
Alignment:
| Q |
369 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
460 |
Q |
| |
|
||||| |||||||| || ||||| || | |||||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
10883172 |
ccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacc |
10883263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 10887087 - 10887178
Alignment:
| Q |
369 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
460 |
Q |
| |
|
||||| |||||||| || ||||| || | |||||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
10887087 |
ccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacc |
10887178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University