View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16526_low_10 (Length: 229)
Name: NF16526_low_10
Description: NF16526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16526_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17004257 - 17004039
Alignment:
| Q |
1 |
catcaccactttgtctccaannnnnnncacttcatccaccacatattggtccttatttttggcaaaagaacttgaaatcaccttaatgttggtcccaagc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17004257 |
catcaccactttgtctccaatttttttcacttcatccaccacatattggtccttatttttggcaaaggaacttgaaatcaccttaatgttggtcccaagc |
17004158 |
T |
|
| Q |
101 |
tttgaaatggcaaaatctaccattgattctagggatagtgcacaatacttatcttctcctatagctgatgggcttctacaatagttgtcaagcccttctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17004157 |
tttgaaatggcaaaatctaccattgattctagggatagtgcacaatacttatcttctcctatagctgatgggcttctacaatagttgtcaagcccttgtc |
17004058 |
T |
|
| Q |
201 |
tctctttttcatcccacat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
17004057 |
tctctttttcatcccacat |
17004039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 17107412 - 17107249
Alignment:
| Q |
28 |
cacttcatccaccacatattggtccttatttttggcaaaagaacttgaaatcaccttaatgttggtcccaagctttgaaatggcaaaatctaccattgat |
127 |
Q |
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||||||||||||| |||||| || | |||| |||||| |||||||||||||||||||| || || ||||||||||| |||||||||| | ||||||| |
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| T |
17107412 |
cacttcatccaccttatattgatcttggttttgggcaaaggaacttgaaatcaccttaatattagttccaagctttgatatggcaaaattcatcattgat |
17107313 |
T |
|
| Q |
128 |
tctagggatagtgcacaatacttatcttctcctatagctgatgggcttctacaatagttgtcaa |
191 |
Q |
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| T |
17107312 |
ttaagggataatgcacaatacttctcttcccctatagcagatggacgtatacaatagttgtcaa |
17107249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 17117446 - 17117575
Alignment:
| Q |
56 |
tttttggcaaaagaacttgaaatcaccttaatgttggtcccaagctttgaaatggcaaaatctaccattgattctagggatagtgcacaatacttatctt |
155 |
Q |
| |
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|||| |||||| || |||| ||| |||||||| || || ||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||| |
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| T |
17117446 |
ttttgggcaaaggagcttgtaattaccttaatatttgttccaagctttgatatggcaaaattcatcattgattttagggatagtgcacaatacttatctt |
17117545 |
T |
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| Q |
156 |
ctcctatagctgatgggcttctacaatagt |
185 |
Q |
| |
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||||||||||||||||| || |||||||| |
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| T |
17117546 |
ctcctatagctgatgggtgtccacaatagt |
17117575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 17956504 - 17956661
Alignment:
| Q |
28 |
cacttcatccaccacatattggtccttatttttggcaaaagaacttgaaatcaccttaatgttggtcccaagctttgaaatggcaaaatctaccattgat |
127 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | ||| |||||||| ||||| || || || | |||||||||||||| |||||||| | ||||||| |
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| T |
17956504 |
cacttcttccaccacatattggtcatgatttttagaaaaggaacttgacatcactttgatattctttccaagctttgaaattgcaaaatccatcattgat |
17956603 |
T |
|
| Q |
128 |
tctagggatagtgcacaatacttatcttctcctatagctgatgggcttctacaatagt |
185 |
Q |
| |
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||||| ||| ||||||||| || ||||| ||||| |||||||| || | |||||||| |
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|
| T |
17956604 |
tctagtgatggtgcacaatgtttgtcttcccctattgctgatggtctcccacaatagt |
17956661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 17986700 - 17986810
Alignment:
| Q |
62 |
gcaaaagaacttgaaatcaccttaatgttggtcccaagctttgaaatggcaaaatctaccattgattctagggatagtgcacaatacttatcttctccta |
161 |
Q |
| |
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||||| ||||||||||||| |||||| || | ||||||||||||||||| ||||||| |||||||||||||| | ||| |||||||| | |||||||| |
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| T |
17986700 |
gcaaaggaacttgaaatcaacttaatattttttccaagctttgaaatggcgaaatctatcattgattctagggttgatgcgcaatacttgtgttctccta |
17986799 |
T |
|
| Q |
162 |
tagctgatggg |
172 |
Q |
| |
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|||||| |||| |
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| T |
17986800 |
tagctgctggg |
17986810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 17945546 - 17945650
Alignment:
| Q |
68 |
gaacttgaaatcaccttaatgttggtcccaagctttgaaatggcaaaatctaccattgattctagggatagtgcacaatacttatcttctcctatagctg |
167 |
Q |
| |
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|||||||| ||||| ||||| || | ||||||||||||||||| ||||| | |||||||||||| || |||||| | || |||||||||||||| | |
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| T |
17945546 |
gaacttgacatcactttaatattctttccaagctttgaaatggcgaaatccatcattgattctagtgaatatgcacagtgtttctcttctcctatagccg |
17945645 |
T |
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| Q |
168 |
atggg |
172 |
Q |
| |
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||||| |
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|
| T |
17945646 |
atggg |
17945650 |
T |
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