View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16526_low_2 (Length: 578)

Name: NF16526_low_2
Description: NF16526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16526_low_2
NF16526_low_2
[»] chr1 (4 HSPs)
chr1 (437-561)||(48977562-48977686)
chr1 (11-129)||(48976725-48976839)
chr1 (184-296)||(48977314-48977429)
chr1 (343-443)||(48977438-48977539)
[»] chr4 (9 HSPs)
chr4 (294-412)||(35130602-35130720)
chr4 (279-414)||(31351649-31351784)
chr4 (294-412)||(13538246-13538364)
chr4 (294-405)||(49479462-49479573)
chr4 (294-410)||(42657503-42657619)
chr4 (288-395)||(9460178-9460284)
chr4 (348-411)||(55967780-55967843)
chr4 (304-410)||(38415496-38415602)
chr4 (304-412)||(35010384-35010492)
[»] chr2 (3 HSPs)
chr2 (294-380)||(37123587-37123673)
chr2 (279-417)||(9198907-9199044)
chr2 (279-416)||(31068869-31069006)
[»] chr3 (8 HSPs)
chr3 (281-415)||(6757233-6757367)
chr3 (316-416)||(55009517-55009617)
chr3 (294-380)||(38745284-38745370)
chr3 (294-380)||(41259944-41260030)
chr3 (336-416)||(32594559-32594639)
chr3 (288-358)||(51829542-51829612)
chr3 (306-415)||(6459197-6459306)
chr3 (294-410)||(54240605-54240721)
[»] chr8 (3 HSPs)
chr8 (294-358)||(13147735-13147799)
chr8 (279-405)||(28300093-28300219)
chr8 (279-412)||(12959706-12959839)
[»] chr6 (6 HSPs)
chr6 (292-411)||(24618950-24619068)
chr6 (31-111)||(230722-230797)
chr6 (304-412)||(6922635-6922743)
chr6 (304-415)||(12606646-12606757)
chr6 (294-402)||(7326322-7326430)
chr6 (347-375)||(12232167-12232195)
[»] chr7 (6 HSPs)
chr7 (294-412)||(9667222-9667340)
chr7 (294-395)||(25091177-25091277)
chr7 (304-365)||(45967362-45967423)
chr7 (317-399)||(13054607-13054689)
chr7 (327-365)||(36114325-36114363)
chr7 (294-410)||(27227255-27227371)
[»] scaffold0166 (1 HSPs)
scaffold0166 (281-403)||(35865-35987)
[»] chr5 (4 HSPs)
chr5 (281-403)||(24793482-24793604)
chr5 (279-417)||(30327649-30327787)
chr5 (279-380)||(15409184-15409284)
chr5 (294-415)||(20706501-20706622)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 437 - 561
Target Start/End: Original strand, 48977562 - 48977686
Alignment:
Q  437 cactaaaaggtgaccacactaatatgaaaatgtgcatcccggtggtatgcttccttccgtccaaataaaccaaccccaaatatgaacataatctttgtaa 536  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  48977562 cactaaaaggtgaccacaccaatatgaaaatgtgcatcctggtggtatgcttccttccgtccaaataaaccaaccccaaataggaacctaatctttgtaa 48977661  T
Q  537 tgacctcactaatgttggcaccctt 561  Q
    |||||| ||||||||||||||||||    
T  48977662 tgaccttactaatgttggcaccctt 48977686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 48976725 - 48976839
Alignment:
Q  11 cagagaggactccagagagaggggatcgaacaaattgatttggtaaaccaatttatatatttagggtataagggatttagagagagggaaaccaattttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||| |||||    
T  48976725 cagagaggactccagagagaggggatcgaacaaattgatttggtaaaccaattttt----ttagggtataagggatttagagagagggaaaccatttttt 48976820  T
Q  111 ttggaggaatagagatatg 129  Q
    |||||||||||||||||||    
T  48976821 ttggaggaatagagatatg 48976839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 48977314 - 48977429
Alignment:
Q  184 gaacattacttgacccaccaaaactatatattcattgtcttacaaatattttatc---nnnnnnnnnaagcaaaattgtattaaagggataccttccatt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||| |||||||| | ||||||||||    
T  48977314 gaacattacttgacccaccaaaactatatattcattgtcttacaaatattttatctttttcttttttaagcaaaattgcattaaaggaacaccttccatt 48977413  T
Q  281 ttttattttggtgaag 296  Q
    ||||||||||||||||    
T  48977414 ttttattttggtgaag 48977429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 443
Target Start/End: Original strand, 48977438 - 48977539
Alignment:
Q  343 aatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacggaacaa-atacaacacaattaagatacacta 441  Q
    |||||||||||||||||||||||||| ||||||||||||| | ||| |||||||| | ||||| |||||| |||| ||||||||||||||||||||||||    
T  48977438 aatttggggttcgaaccccgaccaccgcacaaattatcttggatagataccaattaagctacagttacgggacaacatacaacacaattaagatacacta 48977537  T
Q  442 aa 443  Q
    ||    
T  48977538 aa 48977539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 35130602 - 35130720
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||  ||||||| ||| |||||||| || |||||||||||| |||||  ||||||||||||||| || |  ||||||||||||  ||||||||||    
T  35130602 aagtagtcatgtggctagattcacacacataatgtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctacc 35130701  T
Q  394 aattgaactacatttacgg 412  Q
    || ||||||||| ||||||    
T  35130702 aactgaactacacttacgg 35130720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 279 - 414
Target Start/End: Original strand, 31351649 - 31351784
Alignment:
Q  279 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 378  Q
    |||||| ||||| | ||||||||| ||||||| ||| ||||| ||||| |||| |||| || |||||  || ||||||||||||||| |  |||||||||    
T  31351649 tttttttttttgatcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaatta 31351748  T
Q  379 tcttcggtagctaccaattgaactacatttacggaa 414  Q
    |||  |||||||||||| ||| ||||| ||||||||    
T  31351749 tctctggtagctaccaactgagctacacttacggaa 31351784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 13538246 - 13538364
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||| ||||||| ||| ||||||||||| | || ||||||| |||||||||||||||||| ||  || | |||||||||||||  | ||||||||    
T  13538246 aagtagtctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctacc 13538345  T
Q  394 aattgaactacatttacgg 412  Q
    || ||| ||||| ||||||    
T  13538346 aactgagctacacttacgg 13538364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 49479573 - 49479462
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||| |||| || ||| ||||||||||| |||| ||||||  |||||| ||| |||||||||| ||| | ||| ||||||| |  | ||||||||    
T  49479573 aagtagtctagtggttagattcacacacattatgtgtggagaagttggaaattcgggattcgaacccctacccctacataaattatttctgatagctacc 49479474  T
Q  394 aattgaactaca 405  Q
    || |||||||||    
T  49479473 aactgaactaca 49479462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 42657619 - 42657503
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||| | |||| || ||| ||||||||||| ||||||||||||   ||| |||||||||||| |||||| | | | |||||||||  | ||||||||    
T  42657619 aagtagtttagtggttaaattcacacacattatgtgtgaagaagtggagaatgtggggttcgaactccgacccctatataaattatctctgatagctacc 42657520  T
Q  394 aattgaactacatttac 410  Q
    || ||| ||||| ||||    
T  42657519 aactgagctacacttac 42657503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 9460284 - 9460178
Alignment:
Q  288 ttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggta 387  Q
    ||||| ||||||| | ||||||| ||| ||||||||||| |||| |||| || | ||| |||| || ||||||||||| | |||||||||||||  | ||    
T  9460284 ttggtcaagtagtttagtggctatattcacacacattatgtgtggagaaatggggaatatgggatttgaaccccgacc-ctacacaaattatctctgata 9460186  T
Q  388 gctaccaa 395  Q
    ||||||||    
T  9460185 gctaccaa 9460178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 55967843 - 55967780
Alignment:
Q  348 ggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacg 411  Q
    ||||||||||||||| || | |||||||||||| | ||||| |||||||||| ||||| |||||    
T  55967843 ggggttcgaaccccggcccctacacaaattatccttggtagttaccaattgagctacacttacg 55967780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 38415496 - 38415602
Alignment:
Q  304 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 403  Q
    ||||||| ||| ||||||||||| | ||||||| ||   ||||||||||||||| || |||| |  ||||||||||| | | |||||||||| ||| |||    
T  38415496 gtggctagattcacacacattatgtatgaagaaatggagaatttggggttcgaatcctgacctctgcacaaattatccttgatagctaccaactgagcta 38415595  T
Q  404 catttac 410  Q
    || ||||    
T  38415596 cacttac 38415602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 35010384 - 35010492
Alignment:
Q  304 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 403  Q
    ||||||| ||| | ||||||||| |||| ||||||| |||||  || ||||||||||||||  |  ||||||||||||  | |||||||||| ||| |||    
T  35010384 gtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagcta 35010483  T
Q  404 catttacgg 412  Q
     | ||||||    
T  35010484 aacttacgg 35010492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 294 - 380
Target Start/End: Complemental strand, 37123673 - 37123587
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 380  Q
    ||||||||| ||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||| ||||| | | ||||||||||||    
T  37123673 aagtagtctagtggctagattcacacacattatgtgtggagaagtgagaaatttggggttcgaatcccgaaccctacacaaattatc 37123587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 279 - 417
Target Start/End: Original strand, 9198907 - 9199044
Alignment:
Q  279 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaacccc-gaccaccacacaaatt 377  Q
    |||||| ||||||| |||||| || ||||||| |||  |||||||||| |||| ||||||| |||||| | |||||||||||| | || |  ||||||||    
T  9198907 tttttttttttggtcaagtagcctcgtggctaaatt--cacacattatgtgtggagaagtgggaaattcgaggttcgaaccccagcccgctgcacaaatt 9199004  T
Q  378 atcttcggtagctaccaattgaactacatttacggaacaa 417  Q
    ||||  |||||||||||| ||| ||||| |||||| ||||    
T  9199005 atctctggtagctaccaactgagctacacttacgggacaa 9199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 416
Target Start/End: Original strand, 31068869 - 31069006
Alignment:
Q  279 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 378  Q
    |||||| |||| || || |||||| |||| || ||| ||||||||||  |||| ||||||| | |||  || |||| ||| |||||| | ||||||||||    
T  31068869 ttttttttttttgtcaaatagtctagtggttagattcacacacattaagtgtggagaagtggggaatccggagttcaaactccgacccctacacaaatta 31068968  T
Q  379 tcttcggtagctaccaattgaactacatttacggaaca 416  Q
    ||   | |||||||||| ||| ||||| ||||||||||    
T  31068969 tcaatgttagctaccaactgagctacacttacggaaca 31069006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 415
Target Start/End: Complemental strand, 6757367 - 6757233
Alignment:
Q  281 ttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 380  Q
    |||| ||||||| || ||| || ||||||| ||| ||||||||||| |||| | ||||||||||| | |||||| |||| | |||||  |||||||||||    
T  6757367 tttttttttggttaaatagcctagtggctagatttacacacattatgtgtggaaaagtgagaaatctagggttcaaacctcaaccactgcacaaattatc 6757268  T
Q  381 ttcggtagctaccaattgaactacatttacggaac 415  Q
     | | ||||||||| |||| |||||||||||||||    
T  6757267 cttgatagctaccagttgagctacatttacggaac 6757233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 416
Target Start/End: Complemental strand, 55009617 - 55009517
Alignment:
Q  316 acacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacggaac 415  Q
    ||||||||||| | || |||||||||||||  |||||||||||||||  | | ||||||||||||     |||||||||||||| ||||| |||||||||    
T  55009617 acacacattatgtatggagaagtgagaaatccggggttcgaaccccggtctctacacaaattatccctaatagctaccaattgagctacacttacggaac 55009518  T
Q  416 a 416  Q
    |    
T  55009517 a 55009517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 38745284 - 38745370
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 380  Q
    ||||||||| ||||||| ||| ||||||||| | |||| ||||||| | |||| |||||||||| ||||||| |  |||||||||||    
T  38745284 aagtagtctagtggctagattcacacacattttgtgtggagaagtggggaattcggggttcgaatcccgacccctgcacaaattatc 38745370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 41259944 - 41260030
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 380  Q
    |||||| || ||||||| ||| ||||||||||| |||| ||||||| | |||| |||| |||||||||| || | ||||||||||||    
T  41259944 aagtagcctagtggctagattcacacacattatgtgtggagaagtggggaattcgggggtcgaaccccggcccctacacaaattatc 41260030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 32594639 - 32594559
Alignment:
Q  336 agtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactacatttacggaaca 416  Q
    |||| |||||| |||||||||||||||||||| |||||||||||      || ||||||| ||||||||| ||||||||||    
T  32594639 agtgggaaattcggggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaaca 32594559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 51829542 - 51829612
Alignment:
Q  288 ttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaac 358  Q
    ||||| ||||||| | ||||||| ||| ||| ||||||| |||| ||||||||| ||| ||||||||||||    
T  51829542 ttggtcaagtagtatagtggctagattcacatacattatgtgtggagaagtgaggaatctggggttcgaac 51829612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 6459197 - 6459306
Alignment:
Q  306 ggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaactaca 405  Q
    ||||| ||| ||||||||||| | || | |||||| |||| |||||||| |||||| ||||   ||||||||||| |  |||||||| | ||||  ||||    
T  6459197 ggctagatttacacacattatgtatggaaaagtgaaaaatctggggttcaaaccccaaccattgcacaaattatccttagtagctactagttgagttaca 6459296  T
Q  406 tttacggaac 415  Q
    ||||||||||    
T  6459297 tttacggaac 6459306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 54240721 - 54240605
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||| |||| || ||| |||||||||||  ||| |||||||  ||||  | |||||||||||||||| |  |||| ||| || | ||||||| ||    
T  54240721 aagtagtctagtggttagattcacacacattatgcgtggagaagtggaaaatccgaggttcgaaccccgacccctgcacatattgtccttggtagctgcc 54240622  T
Q  394 aattgaactacatttac 410  Q
    || ||| ||||||||||    
T  54240621 aactgagctacatttac 54240605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 13147735 - 13147799
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaac 358  Q
    ||||||||| ||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  13147735 aagtagtctagtggctagattcacacacattatgtgtgaagaagtgtgaaatttggggttcgaac 13147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 405
Target Start/End: Complemental strand, 28300219 - 28300093
Alignment:
Q  279 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 378  Q
    |||||| ||||||| |||||| || ||||||| ||| ||||||||||| | || ||||||| | |||  ||||||||||||||| || |  |||||||||    
T  28300219 tttttttttttggtcaagtagccttgtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaaccccggcccctgcacaaatta 28300120  T
Q  379 tcttcggtagctaccaattgaactaca 405  Q
    || | |||||||||||| ||| |||||    
T  28300119 tcattggtagctaccaactgagctaca 28300093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 412
Target Start/End: Complemental strand, 12959839 - 12959706
Alignment:
Q  279 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 378  Q
    |||||| |||| || ||||||  | ||||||| ||| |||||||||||||| ||| ||||| | ||| ||||||||||||||| ||| |  ||||| |||    
T  12959839 ttttttgtttttgtcaagtagcttcgtggctagattcacacacattatatgcgaataagtggggaatctggggttcgaaccccaacccctgcacaagtta 12959740  T
Q  379 tcttcggtagctaccaattgaactacatttacgg 412  Q
    ||   | |||||||||| ||| ||||| ||||||    
T  12959739 tccctgatagctaccaactgagctacacttacgg 12959706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 292 - 411
Target Start/End: Original strand, 24618950 - 24619068
Alignment:
Q  292 tgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagcta 391  Q
    ||||||||| | |||||||| || ||||||||||||| || ||||||  |||||| ||||||||||| ||| ||||  || ||||||||||  |||||||    
T  24618950 tgaagtagtatagtggctacgttcacacacattatatatggagaagtaggaaatt-ggggttcgaactccggccactgcataaattatctttagtagcta 24619048  T
Q  392 ccaattgaactacatttacg 411  Q
    |||| ||| |||||||||||    
T  24619049 ccaactgagctacatttacg 24619068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 230722 - 230797
Alignment:
Q  31 ggggatcgaacaaattgatttggtaaaccaatttatatatttagggtataagggatttagagagagggaaaccaatttttt 111  Q
    ||||||| ||| ||||||||||| ||| ||||||     ||||| ||||||||||||||||||||||||||||||||||||    
T  230722 ggggatcaaaccaattgatttggaaaatcaattt-----tttagagtataagggatttagagagagggaaaccaatttttt 230797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 6922635 - 6922743
Alignment:
Q  304 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 403  Q
    ||||||| ||| |||||||||||||||| ||||||| | ||| ||| ||| ||||||||||| |  ||||||||||    |||||||||||| |||||||    
T  6922635 gtggctagattcacacacattatatgtggagaagtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactgaacta 6922734  T
Q  404 catttacgg 412  Q
    || ||||||    
T  6922735 cacttacgg 6922743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 12606757 - 12606646
Alignment:
Q  304 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattgaacta 403  Q
    ||||||| ||| |||||||||||||||||||||||| | ||| ||||||||||||| |||   | ||||||||||||    ||||||||||| ||| |||    
T  12606757 gtggctagattcacacacattatatgtgaagaagtggggaatctggggttcgaacctcgattcctacacaaattatccctagtagctaccaactgagcta 12606658  T
Q  404 catttacggaac 415  Q
    || |||| ||||    
T  12606657 cacttacagaac 12606646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 402
Target Start/End: Original strand, 7326322 - 7326430
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||| ||||||| ||| ||||||||||| |||| ||||||| | ||| | ||||||||| ||||||| |  | |||||||||   ||||||||||    
T  7326322 aagtagtctagtggctaaattcacacacattatgtgtggagaagtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagctacc 7326421  T
Q  394 aattgaact 402  Q
    || ||||||    
T  7326422 aactgaact 7326430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 12232195 - 12232167
Alignment:
Q  347 tggggttcgaaccccgaccaccacacaaa 375  Q
    |||||||||||||||||||||||||||||    
T  12232195 tggggttcgaaccccgaccaccacacaaa 12232167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 9667222 - 9667340
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||| ||||||  ||| ||||||||||| | || ||||||| |||||||||||||||||| ||  || | |||||||||||||  | ||||||||    
T  9667222 aagtagtctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctacc 9667321  T
Q  394 aattgaactacatttacgg 412  Q
    || ||| ||||| ||||||    
T  9667322 aactgagctacacttacgg 9667340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 395
Target Start/End: Complemental strand, 25091277 - 25091177
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||| ||| ||| ||||| ||||| |  |||||||||||   ||||||||||    
T  25091277 aagtagtctagtggctagattcacacacattatgtgtgaagaagtga-aaatctggagtttgaacctcgacccctgcacaaattatccctggtagctacc 25091179  T
Q  394 aa 395  Q
    ||    
T  25091178 aa 25091177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 45967362 - 45967423
Alignment:
Q  304 gtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgacc 365  Q
    ||||||| ||| ||||||||||| |||||| ||||||| |||| ||||||||||||||||||    
T  45967362 gtggctagattcacacacattatgtgtgaaaaagtgaggaattcggggttcgaaccccgacc 45967423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 13054689 - 13054607
Alignment:
Q  317 cacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctaccaattga 399  Q
    |||||||||| |||| ||||||| ||||| |||||||||||||||| || |  |||| ||| ||   ||||||||||||||||    
T  13054689 cacacattatgtgtggagaagtgggaaatctggggttcgaaccccggcccctgcacatattttccctggtagctaccaattga 13054607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 36114325 - 36114363
Alignment:
Q  327 atgtgaagaagtgagaaatttggggttcgaaccccgacc 365  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  36114325 atgtggagaagtgagatatttggggttcgaaccccgacc 36114363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 27227255 - 27227371
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    ||||||||| ||||||| ||| | ||||||||| |||| ||||||| | ||| |||| |||||| | | ||| | | |||||||||||  ||||| ||||    
T  27227255 aagtagtctagtggctagattcaaacacattatgtgtggagaagtggggaatctgggattcgaaacacaacccctatacaaattatctctggtaggtacc 27227354  T
Q  394 aattgaactacatttac 410  Q
    || ||| ||||| ||||    
T  27227355 aactgagctacacttac 27227371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 281 - 403
Target Start/End: Complemental strand, 35987 - 35865
Alignment:
Q  281 ttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 380  Q
    |||| |||| || ||||||||| ||||||| ||| ||| ||||||| |||  |||| || ||||| ||||||||| ||||||||| |  |||||||||||    
T  35987 ttttttttttgtcaagtagtctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatc 35888  T
Q  381 ttcggtagctaccaattgaacta 403  Q
    |  | |||||||||| |||||||    
T  35887 tctgatagctaccaactgaacta 35865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 281 - 403
Target Start/End: Complemental strand, 24793604 - 24793482
Alignment:
Q  281 ttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatc 380  Q
    |||| |||| || ||||||||| ||||||| ||| ||| ||||||| |||  |||| || ||||| ||||||||| ||||||||| |  |||||||||||    
T  24793604 ttttttttttgtcaagtagtctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatc 24793505  T
Q  381 ttcggtagctaccaattgaacta 403  Q
    |  | |||||||||| |||||||    
T  24793504 tctgatagctaccaactgaacta 24793482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 417
Target Start/End: Complemental strand, 30327787 - 30327649
Alignment:
Q  279 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 378  Q
    |||||| ||||| | ||||||| | ||||||| ||| ||||| ||||| |||| |||||||   |||| ||||||||||||||| || |  || ||||||    
T  30327787 tttttttttttgatcaagtagtttagtggctagattcacacatattatgtgtggagaagtggcgaattcggggttcgaaccccggcccctgcataaatta 30327688  T
Q  379 tcttcggtagctaccaattgaactacatttacggaacaa 417  Q
    |||  | |||||||||| ||| ||||| ||| |||||||    
T  30327687 tctctgatagctaccaactgagctacacttatggaacaa 30327649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 15409284 - 15409184
Alignment:
Q  279 ttttttattttggtgaagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaatta 378  Q
    |||||| |||| || ||||||||| ||||||| ||| ||||||||||| ||| |||||||| | ||| |||| ||| ||||||| || | ||||||||||    
T  15409284 ttttttttttttgtcaagtagtctagtggctaaattcacacacattatgtgtaaagaagtggggaatctgggattcaaaccccggcc-ctacacaaatta 15409186  T
Q  379 tc 380  Q
    ||    
T  15409185 tc 15409184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 415
Target Start/End: Complemental strand, 20706622 - 20706501
Alignment:
Q  294 aagtagtctggtggctacattgacacacattatatgtgaagaagtgagaaatttggggttcgaaccccgaccaccacacaaattatcttcggtagctacc 393  Q
    |||||| ||||||| || ||| ||||||||||  |||| |||||||  |||| |  ||||| ||||  |||| |  ||||||||||| | ||||||||||    
T  20706622 aagtaggctggtggttagattcacacacattacgtgtggagaagtggaaaatctaaggttcaaaccttgacctctgcacaaattatcgttggtagctacc 20706523  T
Q  394 aattgaactacatttacggaac 415  Q
    || ||| |||||||||| ||||    
T  20706522 aactgagctacatttacagaac 20706501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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