View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_high_11 (Length: 360)
Name: NF16527_high_11
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 40928832 - 40928480
Alignment:
| Q |
1 |
acaagtagtatcctatggtgattactgcaatgctttatccatttttcttccattttgggatccattctccaatttgattttgtgttaatctttgcagttc |
100 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40928832 |
acaagtagtatcttatggtgattactgtaatgctttatccatttttcttccattttgggatccattctctaatttgattttgtgttaatctttgcagttc |
40928733 |
T |
|
| Q |
101 |
aaaagtagtagtactgcaaaaggtatcttcattaactacaggaagatcaatggttttcnnnnnnnaatcttttggaagaggtgttagccttaaattaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
40928732 |
aaaagtagtagtactgcaaaaggtatcttcattaactacaggaagatcaatggttttctttttttaatcttttggaaaaggtgttagccttaaattaagc |
40928633 |
T |
|
| Q |
201 |
caattatgagatacatttattcttgaaaactgatgagtctca---attaccatcgtgtgcatgcacgattcagctttccaatggataattagattcaaga |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40928632 |
caattatgagatacatttattcttgaaaactgatgagtctcaaatattaccatcgtgtgcatgcacgattcagctttccaatggataattagattcaaga |
40928533 |
T |
|
| Q |
298 |
caagacaagatagatggttaggttaggaccgccctcttttcaaccctttcttc |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40928532 |
caagacaagatagatggttaggttaggaccgccctcttttcaaccctttcttc |
40928480 |
T |
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