View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_high_13 (Length: 329)
Name: NF16527_high_13
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 46810291 - 46810602
Alignment:
| Q |
1 |
tatcaatgctgagaacaatcagagaaactttcttgcaggtatactatgtaacataactaaatttaaatattgattgattatgttatgcttagttgaatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46810291 |
tatcaatgctgagaacaatcagagaaactttcttgcaggtatactatgtaacataactaaatttaaatattgattgattatgttatgcttagttgaagat |
46810390 |
T |
|
| Q |
101 |
atagaaaatatttaactatggtacttttttatttggtgaatgaaattttaaaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810391 |
atagaaaatatttaactatggtacttttttatttggtgaatgaaattttaaaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagag |
46810490 |
T |
|
| Q |
201 |
gttgcattccctggatctgctgaagaggttgataggctaataaagaaccaaagacaatcttactttgcaaatgctcaacctcaacaaagggaggaaggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810491 |
gttgcattccctggatctgctgaagaggttgataggctaataaagaaccaaagacaatcttactttgcaaatgctcaacctcaacaaagggaggaaggaa |
46810590 |
T |
|
| Q |
301 |
gccagaaaagaa |
312 |
Q |
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|||||||||||| |
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| T |
46810591 |
gccagaaaagaa |
46810602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 30287116 - 30287257
Alignment:
| Q |
151 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
250 |
Q |
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|||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||| |||| ||||| || ||| ||||||| || |
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| T |
30287116 |
aaggtgaggaggacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatca |
30287215 |
T |
|
| Q |
251 |
aagacaatcttactttgcaaatgctcaacctcaacaaaggga |
292 |
Q |
| |
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| T |
30287216 |
gagacaatcttactttgcaaatgctcagcctcaacaaaggga |
30287257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 30299992 - 30300133
Alignment:
| Q |
151 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
250 |
Q |
| |
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|||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||| |||| ||||| || ||| ||||||| || |
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| T |
30299992 |
aaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatca |
30300091 |
T |
|
| Q |
251 |
aagacaatcttactttgcaaatgctcaacctcaacaaaggga |
292 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
30300092 |
gagacaatcttactttgcaaatgctcagcctcaacaaaggga |
30300133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 30315650 - 30315791
Alignment:
| Q |
151 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
250 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||||||||| ||| |||| ||||| || ||| ||||||| || |
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| T |
30315650 |
aaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatca |
30315749 |
T |
|
| Q |
251 |
aagacaatcttactttgcaaatgctcaacctcaacaaaggga |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
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| T |
30315750 |
gagacaatcttactttgcaaatgctcagcctcaacaaaggga |
30315791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 30292150 - 30292291
Alignment:
| Q |
151 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
250 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| |||| ||||| || ||| ||||||| || |
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| T |
30292150 |
aaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatca |
30292249 |
T |
|
| Q |
251 |
aagacaatcttactttgcaaatgctcaacctcaacaaaggga |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
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| T |
30292250 |
gagacaatcttactttgcaaatgctcagcctcaacaaaggga |
30292291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 30304784 - 30304925
Alignment:
| Q |
151 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
250 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| |||| ||||| || ||| ||||||| || |
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| T |
30304784 |
aaggtgaggaggacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatca |
30304883 |
T |
|
| Q |
251 |
aagacaatcttactttgcaaatgctcaacctcaacaaaggga |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
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| T |
30304884 |
gagacaatcttactttgcaaatgctcagcctcaacaaaggga |
30304925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30315453 - 30315495
Alignment:
| Q |
1 |
tatcaatgctgagaacaatcagagaaactttcttgcaggtata |
43 |
Q |
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|||||||||||||||||||||||| ||||| ||||| |||||| |
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| T |
30315453 |
tatcaatgctgagaacaatcagaggaacttccttgctggtata |
30315495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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