View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16527_high_22 (Length: 230)

Name: NF16527_high_22
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16527_high_22
NF16527_high_22
[»] chr7 (15 HSPs)
chr7 (50-214)||(26296969-26297151)
chr7 (102-214)||(26241991-26242103)
chr7 (129-214)||(26250466-26250551)
chr7 (106-214)||(26178681-26178789)
chr7 (84-214)||(26154778-26154909)
chr7 (129-214)||(26301432-26301517)
chr7 (139-214)||(26128198-26128273)
chr7 (112-214)||(26184876-26184978)
chr7 (115-214)||(19103988-19104087)
chr7 (159-214)||(26207086-26207141)
chr7 (112-214)||(26190869-26190971)
chr7 (178-211)||(26226640-26226673)
chr7 (178-214)||(26259569-26259605)
chr7 (115-214)||(26082337-26082436)
chr7 (115-214)||(26106124-26106223)
[»] chr4 (1 HSPs)
chr4 (116-214)||(44902849-44902947)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 26296969 - 26297151
Alignment:
Q  50 atgactaaaacacataaatagaacctaccatccataaatatcaactctacaataatagaa------------------ccaagcaacaatggagtcccaa 131  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||                  |||||||||||||||||| |||    
T  26296969 atgactaaaacacataaatagaccctgccatccataaatatcaactctacaataatagaaccaagcaacaatggagaaccaagcaacaatggagtctcaa 26297068  T
Q  132 caatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26297069 caatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 26297151  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 26241991 - 26242103
Alignment:
Q  102 taatagaaccaagcaacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattg 201  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||| ||  ||| |||||||||||||||||||    
T  26241991 taatagaaccaagcaacaatggaatctcaacaatcccataacaaacttcatgttgtttttcttccatatccagctattggccatatgaaccctatgattg 26242090  T
Q  202 acacagcaagact 214  Q
    |||| ||||||||    
T  26242091 acactgcaagact 26242103  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 26250466 - 26250551
Alignment:
Q  129 caacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26250466 caacaatccaataaccaacttcatgttgtttttcttccatatccatctgctggtcatatgaaccctatgattgacactgcaagact 26250551  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 26178681 - 26178789
Alignment:
Q  106 agaaccaagcaacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacac 205  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||  |||||||| |||||    
T  26178681 agaaccaagcaacaatggagtctcaacaatcccataacaaacttcatgttgtttttcttccatttccaactcctggtcatatgattcctatgatagacac 26178780  T
Q  206 agcaagact 214  Q
    |||||||||    
T  26178781 agcaagact 26178789  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 26154778 - 26154909
Alignment:
Q  84 taaatatcaactcta-caataatagaaccaagcaacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggt 182  Q
    ||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    ||||||||| |||||  | ||||     
T  26154778 taaatatcaactctagcagtaatagaaccaagcaacaatggagtctcaacaatcccataaccaacttcatgtaacttttcttccacatccaagtcctggc 26154877  T
Q  183 catatgaaccctatgattgacacagcaagact 214  Q
    |||||||| ||||||||||||||||| |||||    
T  26154878 catatgaatcctatgattgacacagctagact 26154909  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 26301432 - 26301517
Alignment:
Q  129 caacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    ||||||||||||||| ||||||||||  | |||||||||| |||| || ||||||||||||| |||||||| ||||||||||||||    
T  26301432 caacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggtcatatgaatcctatgatagacacagcaagact 26301517  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 26128198 - 26128273
Alignment:
Q  139 ataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    ||||| ||||||||||||| |||||| ||||||||  | |||| |||||||| |||||||||||||||||||||||    
T  26128198 ataaccaacttcatgttgtttttctttcatatccaagtcctggccatatgaatcctatgattgacacagcaagact 26128273  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 26184876 - 26184978
Alignment:
Q  112 aagcaacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaag 211  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||  | ||| ||||||||||| || |||| |||||||| || ||||| | |||| ||||    
T  26184876 aagcaacaatggactcccaataatcccataacaaacttcatgtaatttttgttccatatccaactcctggccatatgaatcccatgatagccacatcaag 26184975  T
Q  212 act 214  Q
    |||    
T  26184976 act 26184978  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 19104087 - 19103988
Alignment:
Q  115 caacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    |||||||||| || ||||||||| ||||| ||||||||||    ||||||||||||||| || | || |||||||  |||||||| ||||||||||||||    
T  19104087 caacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactccaggccatatgattcctatgatagacacagcaagact 19103988  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 26207086 - 26207141
Alignment:
Q  159 tttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    ||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  26207086 tttctaccatatccaactcctggccatatgaaccctatgattgacacagcaagact 26207141  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 26190869 - 26190971
Alignment:
Q  112 aagcaacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaag 211  Q
    |||||| |||| | || ||||||||| |||||  |||||||||    |||||||||| ||||||| |||| |||||||  |||||||||||||| |||||    
T  26190869 aagcaataatgaaatctcaacaatcccataacccacttcatgtaacttttcttccatttccatctcctggccatatgattcctatgattgacactgcaag 26190968  T
Q  212 act 214  Q
    |||    
T  26190969 act 26190971  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 26226640 - 26226673
Alignment:
Q  178 ctggtcatatgaaccctatgattgacacagcaag 211  Q
    ||||||||||||||||||||||||||||||||||    
T  26226640 ctggtcatatgaaccctatgattgacacagcaag 26226673  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 26259569 - 26259605
Alignment:
Q  178 ctggtcatatgaaccctatgattgacacagcaagact 214  Q
    |||| ||||||||||||||||||||||||||||||||    
T  26259569 ctggccatatgaaccctatgattgacacagcaagact 26259605  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 26082337 - 26082436
Alignment:
Q  115 caacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    ||||||||||||| ||||||||  ||||| |||||||  |  | ||| ||||||||||| || |||| |||||||| || ||||| | ||||||||||||    
T  26082337 caacaatggagtctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggccatatgaatccaatgatagccacagcaagact 26082436  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 26106124 - 26106223
Alignment:
Q  115 caacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    ||||||||||||| ||||||||  ||||| |||||||  |  | ||| ||||||||||| || |||| |||||||| || ||||| | ||||||||||||    
T  26106124 caacaatggagtctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggccatatgaatccaatgatagccacagcaagact 26106223  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 44902849 - 44902947
Alignment:
Q  116 aacaatggagtcccaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagact 214  Q
    ||||||||| || ||||||||||||||| |||||||||| || ||||||||||||||| || |||| |||||||  || ||| | ||||||||||||||    
T  44902849 aacaatggattctcaacaatccaataaccaacttcatgtagtttttcttccatatccaactcctggccatatgattcccatggtagacacagcaagact 44902947  T

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