View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_high_4 (Length: 584)
Name: NF16527_high_4
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 78 - 342
Target Start/End: Original strand, 53942308 - 53942572
Alignment:
| Q |
78 |
aaatataccttgaaaaaccggcaagaaacaaactagaattatagcaggagtaccaccctactctactaggaagtagtagtaaataagaagaaagggtgaa |
177 |
Q |
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| T |
53942308 |
aaatataccttgaaaaaccggcaagaaacaaactagaattatagcaggagtaccaccctactctactaggaagtagtagtaaataagaagaaagggtgaa |
53942407 |
T |
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| Q |
178 |
tgaaaaattaatttagtgtgaatagtgaggatacaccattggataagtcaaacttgcacacaacgatcattccaatggttagaaatcattctctaccatg |
277 |
Q |
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| T |
53942408 |
tgaaaaattaatttagtgtcaatagtgaggatacaccattggataagtcaaacttgcacacatcgatcattccaatggttagaaatcattctctaccatg |
53942507 |
T |
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| Q |
278 |
accacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaactgaattctcttgt |
342 |
Q |
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| T |
53942508 |
accacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaactgaattctcttgt |
53942572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 372 - 572
Target Start/End: Original strand, 53942581 - 53942781
Alignment:
| Q |
372 |
tgattgtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaaaacaacaacaaaaatgacaatcctttcttc |
471 |
Q |
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| T |
53942581 |
tgatagtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaacacaacaacaaaaatgacaatcctttcttc |
53942680 |
T |
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| Q |
472 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaacttctaaccttagaactcaaatccaatcctatgct |
571 |
Q |
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| T |
53942681 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaatttctaaccttagaactcaaatccaatcctatgct |
53942780 |
T |
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| Q |
572 |
t |
572 |
Q |
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| T |
53942781 |
t |
53942781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 53942241 - 53942271
Alignment:
| Q |
18 |
caaacaggataatctgaaccatgatagatag |
48 |
Q |
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| T |
53942241 |
caaacaggataatctgaaccatgatagatag |
53942271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 18889183 - 18889223
Alignment:
| Q |
79 |
aatataccttgaaaaaccggcaagaaacaaactagaattat |
119 |
Q |
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| T |
18889183 |
aatataccctgaaaaaccggctagaaagaaactagaattat |
18889223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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