View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_high_5 (Length: 577)
Name: NF16527_high_5
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_high_5 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: scaffold0108 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 15 - 560
Target Start/End: Original strand, 17114 - 17650
Alignment:
| Q |
15 |
atgaatcaaatagaagcaatatgttccctcttgacaattttgatgccttagctgcaactaatggtaagctaatatttctagtacttcattataactatag |
114 |
Q |
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| T |
17114 |
atgaatcaaatagaagcaatatgttccctcttgacaattttgatgccttagctgcaactaatggtaagctaatatttctagtacttcattataactatag |
17213 |
T |
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| Q |
115 |
gatgtgacaaatcatattcactaattatttcacgttctttcacaattgtagaatttaatgcagaaggaaacacgactggacccaaggtgggatagaaatg |
214 |
Q |
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| T |
17214 |
gatgtgacaaatcatattcactaattatttcac----------aattgtagaatttaatgcagaaggaaacacgactggacccaaggtgagatagaaatg |
17303 |
T |
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| Q |
215 |
aaaagaaaaattatggtaagaaaatgtcttcaatatttttgtgttcttaannnnnnngttcaatgttggtaatttataggatcaatatagtggaatgtca |
314 |
Q |
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| T |
17304 |
aaaagaaaaattatggtaagaaaatgtcttcaatatttttgtgttcttaatttttt-gttcaatgttggtaatttataggatcaatatagtggaatgtca |
17402 |
T |
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| Q |
315 |
gtctatcccaaaggattatatgacttgttgatatacataaaagaaaagtatcaaaatcccaatatctacatcactgaaaatggttagtttagttttcata |
414 |
Q |
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| T |
17403 |
gtctatcccaaaggattatatgacttgttgatatacatgaaagaaaagtaccaaaatcccaatatctacatcactgaaaatggttagtttagttttcata |
17502 |
T |
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| Q |
415 |
atgttaacattgtaatttatatctataa--nnnnnnnnnnnccatcagagatattaaccaacctattttattgtgataatatttttgtaggtatttcttc |
512 |
Q |
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| T |
17503 |
atgttaacattgtaatttatatctataattttattttttttccataagagatattaaccaacctattttattgtgataatatttttgtaggtatttcttc |
17602 |
T |
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| Q |
513 |
tcccaatatgacaaatcaattgaaggatgaaaatcggatcgcatacat |
560 |
Q |
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| T |
17603 |
tcccaatatgacaaatcaattgaaggatgaaaatcggatcgcatacat |
17650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 124 - 560
Target Start/End: Original strand, 12416305 - 12416736
Alignment:
| Q |
124 |
aatcatattcactaattatttcacgttctttcacaattgtagaatttaatgcagaaggaaacacgactggacccaaggtgggatagaaatgaaaagaaaa |
223 |
Q |
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| T |
12416305 |
aatcatattcactaattcttgctcattctttcacaattgtagaatttaatgcagaaggaaatacccttggacctatggtgagatataagtgaaaagaaaa |
12416404 |
T |
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| Q |
224 |
attatggtaagaaaatgtcttcaatatttttgtgttcttaannnnnnngttcaatgttggtaatttataggatcaatatagtggaatgtca-gtctatcc |
322 |
Q |
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| T |
12416405 |
atgatggtcatgatattacttcaatatttttgtcttcttaaattttttgttcaatgttggtaatttgtaggaacaatatagta-aatttcatgtctaccc |
12416503 |
T |
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| Q |
323 |
caaaggattatatgacttgttgatatacataaaagaaaagtatcaaaatcccaatatctacatcactgaaaatggttagtttagttttcataatgttaac |
422 |
Q |
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| T |
12416504 |
cgaaggattatataacattttaatatacataaatgaaaagtaccaaaatcccaaaatctacatcactgaaaatggttagttttgtttttatattttttac |
12416603 |
T |
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| Q |
423 |
attgtaatttatatctataannnnnnnnnnnccatcagagatattaaccaacctattttattgtgataatatttttgtaggtatttcttctcccaatatg |
522 |
Q |
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| T |
12416604 |
attgtaatttatatctataa-----ttttttccataaaaaattacaaccaatcttttttcttgtaatcatcttgatgtaggtattgcttctcccaatatg |
12416698 |
T |
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| Q |
523 |
acaaatcaattgaaggatgaaaatcggatcgcatacat |
560 |
Q |
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| T |
12416699 |
acaaatccattgaaagacgaaaatcggatcgcttacat |
12416736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 12416177 - 12416255
Alignment:
| Q |
15 |
atgaatcaaatagaagcaatatgttccctcttgacaattttgatgccttagctgcaactaatggtaagctaatatttct |
93 |
Q |
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| T |
12416177 |
atgaatcaaatagaagcaaaatgtactatattgacaattttgatgcattagctgcaactacaggtaagctaatatttct |
12416255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 18060145 - 18060056
Alignment:
| Q |
315 |
gtctatcccaaaggattatatgacttgttgatatacataaaagaaaagtatcaaaatcccaatatctacatcactgaaaatggttagttt |
404 |
Q |
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| T |
18060145 |
gtctatcccgaaggattatataatttcttactctacattaaaaaaaagtacaaaaatcccaaaatctacattactgaaaatggttggttt |
18060056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 18121669 - 18121580
Alignment:
| Q |
315 |
gtctatcccaaaggattatatgacttgttgatatacataaaagaaaagtatcaaaatcccaatatctacatcactgaaaatggttagttt |
404 |
Q |
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| T |
18121669 |
gtctaccccgaaggattatataatttcttgctctacataaataaaaagtataaaaatccaagaatctacatcactgaaaatggttggttt |
18121580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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