View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_high_8 (Length: 484)
Name: NF16527_high_8
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 471
Target Start/End: Complemental strand, 53532658 - 53532207
Alignment:
| Q |
20 |
atttgtccattaccacaatataaaggtttgcagcgaacaacaactgcaattcgaaaccaccactaaacaaaataaacttattggcagaacaattctatca |
119 |
Q |
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| T |
53532658 |
atttgtccattaccgcaatataaaggtttgcagcgaacaacaactgcaattcgaaaccaccactaaacaaaataaacttattggcagaacaattctatca |
53532559 |
T |
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| Q |
120 |
cacaccagaaaatcttctggtgacattcaaccgtctcctaataccacacatacataagaaaaagtttcccaaaatcataaattttcttgaagttattatg |
219 |
Q |
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| T |
53532558 |
cacaccagaaaatcttctggtgacattcaaccgtctcctaataccacacatacataagaaaaagtttcccaaaatcataaattttcttgaagttattatg |
53532459 |
T |
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| Q |
220 |
ttctaaaaatattttaatacaaaaggatccatcatttcctaacaagaaaacaacaatttaactattcccagtcataagtcagaattgttttcaataacca |
319 |
Q |
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| T |
53532458 |
ttctaaaaatattttaatacaaaaggatccatcatttcctaacaagaaaacaacaatttaactattcccagtcataagtcagaattgttttcaataacca |
53532359 |
T |
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| Q |
320 |
ttaattgaatgcgactaatctgagatctgatagtttaagagcagataatccaaaatttgcaaccataagactctgctacaatgaacagagaacttttctg |
419 |
Q |
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| T |
53532358 |
ttaattgaatgcgactaatctgagatctgatagtttaagagcagataatccaaaatttgcaaccataagactctgctacaatgaacagagaacttttctg |
53532259 |
T |
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| Q |
420 |
aagtttttcatccttattaaacaactcaattaacaatgtggtcaaatcagtg |
471 |
Q |
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| T |
53532258 |
aagtttttcatccttattaaacaactcaattaacaatgtggtcaaatcagtg |
53532207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 20742923 - 20743158
Alignment:
| Q |
29 |
ttaccacaatataaaggtttgcagcg-aacaacaactgcaa-ttcgaaaccaccactaaacaaaataaacttattggcagaacaattctatcacacacca |
126 |
Q |
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||||||||||||||||||| |||||| ||| |||| ||||| || |||| ||| | ||||||||||||||||||| | ||||||||||| | |||| |
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| T |
20742923 |
ttaccacaatataaaggttcgcagcgtaaccacaaatgcaaatttaaaacaaccgttcaacaaaataaacttattggtataacaattctattgcttacca |
20743022 |
T |
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| Q |
127 |
gaaaatcttctggtgacattcaaccgtctcctaataccacacatacataagaaaaagtttcccaaaatcataaattttcttgaagttattatgttctaaa |
226 |
Q |
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| T |
20743023 |
caaaatcttctggtgagatccaactgtctcctaatgccacacctacataagaaaaagtttcccaaaatcatactttttctttcagttgttatgttctaaa |
20743122 |
T |
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| Q |
227 |
aatattttaatacaaaaggatccatcatttcctaac |
262 |
Q |
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||| |||||||||||||| |||||||||||||||| |
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| T |
20743123 |
tatagtttaatacaaaagggtccatcatttcctaac |
20743158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 467
Target Start/End: Original strand, 20743514 - 20743609
Alignment:
| Q |
372 |
aaatttgcaaccataagactctgctacaatgaacagagaacttttctgaagtttttcatccttattaaacaactcaattaacaatgtggtcaaatc |
467 |
Q |
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|||||||| ||||||||||||||| |||||| ||| || ||| || ||||| |||||||| |||||||| || | ||| |||||||| |||||||| |
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| T |
20743514 |
aaatttgccaccataagactctgccacaatgtacaaaggactcttttgaaggttttcatctttattaaataatttaatcaacaatgttgtcaaatc |
20743609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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