View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_1 (Length: 909)
Name: NF16527_low_1
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 18 - 895
Target Start/End: Original strand, 38709945 - 38710808
Alignment:
| Q |
18 |
acagggacagagtcagaaaccataccttgagctatctcaggtgctggcttctgagctgcctttgtttgtagcttatgagtgtccggccttgtcagcctct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709945 |
acagggacagagtcagaaaccataccttgagctatctcaggtgttagcttctgagctgcctttgtttgtagcttatgagtgtccggccttgtcagcctct |
38710044 |
T |
|
| Q |
118 |
gatgcgacattctttgatttgatataacaaactctaacacattgatgtgtgctggtggttcacgataaggagagaatgaaagagggacacatatatgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710045 |
gatgcgacattctttgatttgatataacaaactctaacacattgatgtgtgctggtggttcacgataaggagagaatgaaagagggacacatatatgtat |
38710144 |
T |
|
| Q |
218 |
acatgtacaggctcaccataaaactggttcacgataaaactagtagttacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgaca |
317 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710145 |
aca------ggctcgccataaaactggttcacgataaaactagtagttacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgacg |
38710238 |
T |
|
| Q |
318 |
atctcattgagtaattatttgatagattgtcaaatgtttgccatatggaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaagg |
417 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710239 |
atctcattgagtaattatttgatagattgtcaaacgtttgccatatggaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaagg |
38710338 |
T |
|
| Q |
418 |
ccgagaggaaacatttgaaaccttggatcaaaataacatgnnnnnnnnngatgaaataccaaattgttatctgaaattaagttaatggaccaaaagcact |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38710339 |
ccgagaggaaacatttgaaaccttggatcaaaataacatgaaaaaaaaagatgaaataccaaattgttatctgaaattaagttaatggaccaaaatcact |
38710438 |
T |
|
| Q |
518 |
ttattattttctttatcacgcaagcagctgactttggaatttggtgatgcaaatagtggtttggatctagaggccgaagaagatgtcgatcgatgggatg |
617 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710439 |
ttattattttc-ttatcacgcaagcagctgactttggaatttggtgatgcaaatagtggtttggatctagaggccgaagaagatgtcgatcgatgggatg |
38710537 |
T |
|
| Q |
618 |
tccagttatcatcaactccaggagaaaataacataaagagnnnnnnnnatcactcttgactgtttttgtccataatctgccatttacaaccacgtacgta |
717 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710538 |
tccagttatcatcaactccaggagaaaataacat-aagag--ttttttatcactctcgactgtttttgtccataatctgccatttacaaccacgtacgta |
38710634 |
T |
|
| Q |
718 |
tgca-nnnnnnnncttttcgaagaaagaatgattcttaatttcaacaatttaattatctgctttactaatatctagatgtataaacttttgttatagtga |
816 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710635 |
tgcatttttttttcttttcgaagaaagaatgattcttaatttcaac-----aattatctgctttactaatatctagatgtataaacttttgttatagtga |
38710729 |
T |
|
| Q |
817 |
gaaggaagtagaagaggtcttcagccgctttggtactgtcgcaaaagttcatgtattttggggactcactgttgttcat |
895 |
Q |
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| T |
38710730 |
gaaggaagtagaagaggtcttaagccgctttggtactgtcgcaaaagttcatgtattttggggactcactgttgttcat |
38710808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 513
Target Start/End: Complemental strand, 685003 - 684965
Alignment:
| Q |
475 |
accaaattgttatctgaaattaagttaatggaccaaaag |
513 |
Q |
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|||||||||||||||||||||||||||| |||| ||||| |
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| T |
685003 |
accaaattgttatctgaaattaagttaagggactaaaag |
684965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 11362044 - 11362082
Alignment:
| Q |
475 |
accaaattgttatctgaaattaagttaatggaccaaaag |
513 |
Q |
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|||||||||||||||||||||||||||| |||| ||||| |
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| T |
11362044 |
accaaattgttatctgaaattaagttaagggacgaaaag |
11362082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 513
Target Start/End: Complemental strand, 25061351 - 25061313
Alignment:
| Q |
475 |
accaaattgttatctgaaattaagttaatggaccaaaag |
513 |
Q |
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|||||||||||| ||||||||||||||| |||||||||| |
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| T |
25061351 |
accaaattgttacctgaaattaagttaagggaccaaaag |
25061313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 32809383 - 32809421
Alignment:
| Q |
475 |
accaaattgttatctgaaattaagttaatggaccaaaag |
513 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||| |
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| T |
32809383 |
accaaactgttacctgaaattaagttaatggaccaaaag |
32809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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