View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_11 (Length: 444)
Name: NF16527_low_11
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_11 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 255 - 426
Target Start/End: Original strand, 8432101 - 8432273
Alignment:
| Q |
255 |
ttaaataaagtttcaaaaaag-cagaataaggtgatataaaaatagtgatctttatagctctgaacttcaaccaaagatcaacgataaaaataaatgagg |
353 |
Q |
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| T |
8432101 |
ttaaataaagtttcaaaaaaaacagaacaaggtgatataaaaatagtgatctttatagctctgaacttcaaccaaagatcaacgataaaaatagatgagg |
8432200 |
T |
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| Q |
354 |
aagaagcaattataaaccattttcggtaaactgtagttaagcatagtttgcttgttttgtcttttggccaatg |
426 |
Q |
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| T |
8432201 |
aagaagcaattataaaccattttcggtaaactatagttaagcatagtttgcttgttttgtcatttggccaatg |
8432273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 8430902 - 8430964
Alignment:
| Q |
357 |
aagcaattataaaccattttcggtaaactgtagttaagcatagtttgcttgttttgtcttttg |
419 |
Q |
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| T |
8430902 |
aagcaattagaaaccattgttggtaacctgtagttaaacacagttagcttgttttgtcatttg |
8430964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 8437859 - 8437916
Alignment:
| Q |
20 |
agcttgatggagggtaactaaccaaactataatcatccaattgattacagtcctaaag |
77 |
Q |
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| T |
8437859 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaag |
8437916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 32458923 - 32458977
Alignment:
| Q |
263 |
agtttcaaaaaagcagaataaggtgatataaaaatagtgatctttatagctctgaa |
318 |
Q |
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| T |
32458923 |
agtttcacaaaa-cagaacatggtgatataaaaatagtgatctttatagctctgaa |
32458977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 73108 - 73051
Alignment:
| Q |
20 |
agcttgatggagggtaactaaccaaactataatcatccaattgattacagtcctaaag |
77 |
Q |
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| T |
73108 |
agctagatggagagtaacttactaaattataatcattcaatggattacagtcctaaag |
73051 |
T |
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