View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16527_low_13 (Length: 390)
Name: NF16527_low_13
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 160 - 372
Target Start/End: Complemental strand, 6661876 - 6661664
Alignment:
| Q |
160 |
atccatgcagaattgggattaggttactttacaacaacttactgtttttagatattatgtttcatgtcttcaaatccattcaacacaaataagcagttca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6661876 |
atccatgcagaattgggattaggttactttacaacaacttactgtttttagatattatgtttcatgtcttcaaatccattcaacacaaataagcagttca |
6661777 |
T |
|
| Q |
260 |
tcacaacacacattcactcagcgtctgatatttagagagttttgttttctaatggttgaatgtattggtgagtcagagtactaaagacatgggtatttta |
359 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6661776 |
tcacagcacacattcactcagcgtctgatatttagagagttttgttttctaatggttgaatgtattggtgactcagagtattaaagacatgggtatttta |
6661677 |
T |
|
| Q |
360 |
aggtgatggaagg |
372 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6661676 |
aggtgatggaagg |
6661664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 6662050 - 6661899
Alignment:
| Q |
10 |
gcacagaaactaagaatgactaaagacttggggtgaatgactttaaaactacttctagaacttcaaaacataaaactttcacgtattaggatttgcgcac |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
6662050 |
gcacagtaactaagaatgactaaagacttggggtgaatgactttaaaactacttctataacttcaaaacatgaaactttcacgtattagggtttgcgcac |
6661951 |
T |
|
| Q |
110 |
acaaagtttcgaggattgtagagcatcttttttggactcatctcgatagcat |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6661950 |
acaaagtttcgaggattgtagagcatcttttttggactcatctcgctagcat |
6661899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University